Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010284.1

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1648

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010284.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggagttggtcacgggaagaaaagcaattgacgaaagccagcctgaggagagttgtcacctagtgacatggtttcgtagaaagatcattaaaacagatgcactcccagagatggtaggtcaagcagtcaatgtactttcatcgcttgttgagcaatggaagccatctaagcaagaagatttggatgagatggatgcaatcaacttcgatgtgccgttaaatgaagcagtaaagatgtggcaggctgcggagggcaaaagcaacattgatgaatcctcatcttcatcgatctttcctagcgggcataccacccagaccagccttcctaatcggccttgtggatttgcagagtcgatcgtttacatcatcagatgggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

4.76

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	248, 300
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	46, 112
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	4 cut(s)	106, 172, 184, 366
BceAI	ACGGC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	62, 297
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	88, 184
Bsa29I	ATCGAT	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 112
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	287
BseGI	GGATG	2 cut(s)	190, 199
BseLI	CCNNNNNNNGG	2 cut(s)	46, 112
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	46, 112
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	84, 288, 354
BspACI	CCGC	2 cut(s)	248, 300
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	161
BssMI	GATC	3 cut(s)	84, 288, 354
BstC8I	GCNNGC	3 cut(s)	41, 243, 302
BstDEI	CTNAG	2 cut(s)	45, 168
BstF5I	GGATG	2 cut(s)	190, 199
BstKTI	GATC	3 cut(s)	87, 291, 357
BstMBI	GATC	3 cut(s)	84, 288, 354
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 169
BstV1I	GCAGC	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	190, 199
Cac8I	GCNNGC	3 cut(s)	41, 243, 302
ClaI	ATCGAT	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	6 cut(s)	39, 43, 163, 245, 321, 334
CviKI_1	RGCY	6 cut(s)	39, 43, 163, 245, 321, 334
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	45, 168
DpnI	GATC	3 cut(s)	86, 290, 356
DpnII	GATC	3 cut(s)	84, 288, 354
DraIII	CACNNNGTG	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	72
FaiI	YATR	2 cut(s)	70, 306
FatI	CATG	1 cut(s)	68
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	197, 206
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	62, 297
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	2 cut(s)	272, 350
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	101, 197, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 169
HpyF3I	CTNAG	2 cut(s)	45, 168
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	84, 288, 354
LpnPI	CCDG	6 cut(s)	53, 57, 120, 227, 326, 331
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	88, 184
MaeI	CTAG	2 cut(s)	62, 297
MaeIII	GTNAC	3 cut(s)	10, 56, 64
MalI	GATC	3 cut(s)	86, 290, 356
MboI	GATC	3 cut(s)	84, 288, 354
MboII	GAAGA	3 cut(s)	30, 188, 273
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	3 cut(s)	40, 244, 286
MseI	TTAA	2 cut(s)	90, 218
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 169
NdeII	GATC	3 cut(s)	84, 288, 354
NlaIII	CATG	1 cut(s)	72
NmuCI	GTSAC	3 cut(s)	10, 56, 64
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	247
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PvuI	CGATCG	1 cut(s)	357
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	90, 218
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	3 cut(s)	84, 288, 354
SchI	GAGTC	1 cut(s)	359
SetI	ASST	2 cut(s)	63, 121
SfaNI	GCATC	2 cut(s)	88, 184
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	248, 300
SspMI	CTAG	2 cut(s)	62, 297
TaqI	TCGA	3 cut(s)	207, 287, 353
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	90, 218
Tru9I	TTAA	2 cut(s)	90, 218
TseFI	GTSAC	3 cut(s)	10, 56, 64
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	3 cut(s)	10, 56, 64
TspDTI	ATGAA	4 cut(s)	129, 237, 273, 285
XspI	CTAG	2 cut(s)	62, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.