Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

15201789 .. 15202405

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0093500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCTTGAAATACTTCCCACTACTGATATTAGTACTTGCCTTGGCCACCTCCAAAAGGACCTTAGCAGGTGATCCTGACATTCTTTACGACTTTATAGTGCCACAAAATAACACCACAGTTGATGGGACCTTCTTTACCTACACTGGACTGCGTGGTGTGTTCAATGGAGTTCCCGAAACCTTTAAGGTAACAAAAGCTTCCTTGACTGAATTCCCTGCTCTTGACGGCCAAAGTGTGTCATACGCGGTGCTACAGTTTCCTGCAAATGGTGGACTAAACCCTCCTCACACACACCCTCGCTCGGCTGAACTTTTGTTCCTTGTTGCTGGTTCCTTGGAAGTAGGGTTTGTCGACACAAAGAACGTTCTGTATACTCAAAAGCTTCAAGTTGCATTTGGAAGTGCAAATGCTGGAACAGTTTCAGTGCCATTGTCAGTGTTTGCCACAGGAATTGATGATGAGATCCTCGCTAAATCATTCAAGACTGACATTGATACCATTAAGAAGATCAAGGTTGGCCTCACCTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.09

Weight (kDa)

6.72

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 130	1.2e-12	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	354, 374
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	248
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	2 cut(s)	68, 460
AcoI	YGGCCR	2 cut(s)	45, 229
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	57, 269, 304
AgsI	TTSAA	4 cut(s)	10, 166, 389, 484
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	2 cut(s)	200, 385
AluI	AGCT	2 cut(s)	200, 385
AlwI	GGATC	2 cut(s)	68, 460
AoxI	GGCC	4 cut(s)	3, 45, 229, 520
ApoI	RAATTY	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	14, 421
AspS9I	GGNCC	2 cut(s)	60, 129
AsuHPI	GGTGA	2 cut(s)	83, 517
AvaII	GGWCC	2 cut(s)	60, 129
BalI	TGGCCA	1 cut(s)	47
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	244
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	60, 129
BmgT120I	GGNCC	2 cut(s)	60, 129
BmiI	GGNNCC	2 cut(s)	130, 334
Bpu10I	CCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	42, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 269, 304
Bse1I	ACTGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	42, 336
BseLI	CCNNNNNNNGG	3 cut(s)	57, 269, 304
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	5, 47, 231, 522
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	57, 269, 304
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	4 cut(s)	5, 47, 231, 522
Bsp143I	GATC	3 cut(s)	73, 465, 510
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	4 cut(s)	5, 47, 231, 522
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	130, 334
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	68, 460
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	42, 336
BssMI	GATC	3 cut(s)	73, 465, 510
BssNAI	GTATAC	1 cut(s)	375
BssT1I	CCWWGG	2 cut(s)	42, 336
Bst1107I	GTATAC	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	121, 258, 421
BstDEI	CTNAG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	3 cut(s)	76, 468, 513
BstMBI	GATC	3 cut(s)	73, 465, 510
BstSFI	CTRYAG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	5, 47, 231, 522
BtsIMutI	CAGTG	3 cut(s)	144, 432, 444
BveI	ACCTGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	60, 129
Csp6I	GTAC	1 cut(s)	35
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviJI	RGCY	7 cut(s)	5, 47, 200, 231, 308, 385, 522
CviKI_1	RGCY	7 cut(s)	5, 47, 200, 231, 308, 385, 522
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	75, 467, 512
DpnII	GATC	3 cut(s)	73, 465, 510
EaeI	YGGCCR	2 cut(s)	45, 229
Eco130I	CCWWGG	2 cut(s)	42, 336
Eco47I	GGWCC	2 cut(s)	60, 129
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoO109I	RGGNCCY	2 cut(s)	60, 129
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	42, 336
ErhI	CCWWGG	2 cut(s)	42, 336
FaiI	YATR	3 cut(s)	98, 244, 375
FaqI	GGGAC	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	354, 374
HaeIII	GGCC	4 cut(s)	5, 47, 231, 522
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	198, 383
HphI	GGTGA	2 cut(s)	83, 517
Hpy166II	GTNNAC	3 cut(s)	275, 355, 375
Hpy188III	TCNNGA	4 cut(s)	77, 176, 224, 484
Hpy8I	GTNNAC	3 cut(s)	275, 355, 375
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	121, 258, 421
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	266, 395, 407
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	73, 465, 510
LpnPI	CCDG	8 cut(s)	54, 90, 132, 231, 276, 315, 399, 435
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	75, 467, 512
MboI	GATC	3 cut(s)	73, 465, 510
MboII	GAAGA	1 cut(s)	520
MflI	RGATCY	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	212, 453
MluNI	TGGCCA	1 cut(s)	47
MnlI	CCTC	6 cut(s)	61, 294, 297, 309, 479, 533
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	2 cut(s)	14, 421
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	186, 504
Msp20I	TGGCCA	1 cut(s)	47
MvnI	CGCG	1 cut(s)	248
NdeII	GATC	3 cut(s)	73, 465, 510
NlaIV	GGNNCC	2 cut(s)	130, 334
NmeAIII	GCCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	14, 421
PpuMI	RGGWCCY	2 cut(s)	60, 129
Psp1406I	AACGTT	1 cut(s)	366
Psp5II	RGGWCCY	2 cut(s)	60, 129
PspN4I	GGNNCC	2 cut(s)	130, 334
PspPI	GGNCC	2 cut(s)	60, 129
PspPPI	RGGWCCY	2 cut(s)	60, 129
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	186, 504
Sau3AI	GATC	3 cut(s)	73, 465, 510
Sau96I	GGNCC	2 cut(s)	60, 129
ScaI	AGTACT	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	60, 129
Sse9I	AATT	2 cut(s)	212, 453
SsiI	CCGC	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	42, 336
TaaI	ACNGT	3 cut(s)	121, 258, 421
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	212, 453
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	186, 504
Tru9I	TTAA	2 cut(s)	186, 504
TscAI	CASTG	3 cut(s)	151, 432, 444
TspRI	CASTG	3 cut(s)	151, 432, 444
VpaK11BI	GGWCC	2 cut(s)	60, 129
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	2 cut(s)	354, 374
XmnI	GAANNNNTTC	2 cut(s)	14, 421
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.