Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

51298306 .. 51299569

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0340000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTCGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCGTCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTCAGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTTCATGAGCAAGATCCCAAGCTCCCTCCTGCCCTCCTCCGCCTTTTTTTCCATGATTGCTTTGTCAAGGGTTGTGATGCCTCGATCTTGTTGGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGCCAATGGTGAAACACTCAGAGGTCTTGAGGTTGTTGATGAGATCAAAGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTATCCTGCGCTGACATATTAGCATTTGCTGCTCGGGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAGCCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATGTCAACCTCCCTACACCTGTAACGCCTTTGGGAGACATTATAGACATGTTCGCCAAAAGAGGCTTGACAACAGAAGATATGGTTGTCTTGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAAATTAAAGACAGATTATACAAATATAGCGAAGCTCAGCCCCAAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGCCAGAAAGTGCCCAGCACCAGACACATTACCTGCGAAGCAAGCATTACGTACAATGGTGGACTTTGATCCAACAACACCACTTGACCTCGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCGGATCAAGTACAGACTGCTGATCCCCAAACCGGAGCAATTGTGTACAGAATGGCCGCTAGCTCTGAAACTTGGAGTAAAAAATTTCTCAAGGCCATGATCAAGATGGGGAGAATAAATGTTCTCACCAAAGATGAAGGAGAGATAAGGACAAACTGCCGGGCGTATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

37.31

Weight (kDa)

5.67

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	50 - 303	1.6e-82	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	266
AciI	CCGC	3 cut(s)	21, 208, 906
AclWI	GGATC	4 cut(s)	176, 773, 861, 866
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	1 cut(s)	932
AcvI	CACGTG	1 cut(s)	488
AfaI	GTAC	4 cut(s)	763, 812, 861, 896
AfiI	CCNNNNNNNGG	3 cut(s)	308, 685, 881
AflIII	ACRYGT	2 cut(s)	103, 549
AgsI	TTSAA	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	354, 684
AluBI	AGCT	4 cut(s)	190, 665, 709, 912
AluI	AGCT	4 cut(s)	190, 665, 709, 912
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	531
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	4 cut(s)	176, 773, 861, 866
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	5 cut(s)	72, 162, 436, 903, 942
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	163, 688
AsuC2I	CCSGG	1 cut(s)	1010
AsuHPI	GGTGA	7 cut(s)	25, 31, 40, 290, 291, 323, 967
AsuNHI	GCTAGC	2 cut(s)	709, 908
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	688
BaeGI	GKGCMC	3 cut(s)	374, 604, 725
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	59, 280, 949
BceAI	ACGGC	3 cut(s)	112, 407, 453
BciT130I	CCWGG	2 cut(s)	356, 686
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	948
BcnI	CCSGG	1 cut(s)	1010
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	3 cut(s)	431, 710, 909
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	751
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	21, 411, 906
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	3 cut(s)	22, 412, 907
BmcAI	AGTACT	1 cut(s)	812
Bme1390I	CCNGG	3 cut(s)	356, 686, 1010
Bme18I	GGWCC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	163, 688
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	3 cut(s)	356, 686, 1010
BmsI	GCATC	1 cut(s)	235
BmtI	GCTAGC	2 cut(s)	713, 912
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	350, 923
BpuMI	CCSGG	1 cut(s)	1010
BsaAI	YACGTR	2 cut(s)	488, 761
BsaJI	CCNNGG	5 cut(s)	69, 75, 132, 354, 684
BsaWI	WCCGGW	2 cut(s)	596, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 685, 881
Bse118I	RCCGGY	2 cut(s)	434, 461
BseBI	CCWGG	2 cut(s)	356, 686
BseDI	CCNNGG	5 cut(s)	69, 75, 132, 354, 684
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	308, 685, 881
BseMII	CTCAG	3 cut(s)	144, 334, 680
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	3 cut(s)	374, 604, 725
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	2 cut(s)	457, 724
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	5 cut(s)	74, 164, 438, 905, 944
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	5 cut(s)	435, 462, 597, 882, 1009
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	308, 685, 881
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	5 cut(s)	74, 164, 438, 905, 944
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	374, 604, 725
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
Bsp1720I	GCTNAGC	1 cut(s)	666
BspACI	CCGC	3 cut(s)	21, 208, 906
BspANI	GGCC	5 cut(s)	74, 164, 438, 905, 944
BspCNI	CTCAG	3 cut(s)	145, 333, 679
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	751
BspOI	GCTAGC	2 cut(s)	713, 912
BspPI	GGATC	4 cut(s)	176, 773, 861, 866
BsrFI	RCCGGY	2 cut(s)	434, 461
BsrGI	TGTACA	1 cut(s)	894
BssAI	RCCGGY	2 cut(s)	434, 461
BssECI	CCNNGG	5 cut(s)	69, 75, 132, 354, 684
BssMI	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
BssT1I	CCWWGG	2 cut(s)	75, 132
Bst2UI	CCWGG	2 cut(s)	356, 686
Bst4CI	ACNGT	2 cut(s)	382, 476
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	2 cut(s)	488, 761
BstC8I	GCNNGC	5 cut(s)	436, 711, 753, 842, 910
BstDEI	CTNAG	3 cut(s)	153, 320, 666
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	7 cut(s)	184, 255, 348, 781, 856, 874, 951
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 419, 752
BstNI	CCWGG	2 cut(s)	356, 686
BstNSI	RCATGY	2 cut(s)	107, 553
BstSCI	CCNGG	3 cut(s)	354, 684, 1008
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	3 cut(s)	374, 604, 725
BstSNI	TACGTA	1 cut(s)	761
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	5 cut(s)	74, 164, 438, 905, 944
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	5 cut(s)	436, 711, 753, 842, 910
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	2 cut(s)	434, 461
Cfr13I	GGNCC	2 cut(s)	163, 688
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	762, 811, 860, 895
CviAII	CATG	5 cut(s)	104, 173, 221, 550, 946
CviQI	GTAC	4 cut(s)	762, 811, 860, 895
DdeI	CTNAG	3 cut(s)	153, 320, 666
DpnI	GATC	7 cut(s)	183, 254, 347, 780, 855, 873, 950
DpnII	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
EaeI	YGGCCR	1 cut(s)	903
EciI	GGCGGA	1 cut(s)	197
Eco105I	TACGTA	1 cut(s)	761
Eco130I	CCWWGG	2 cut(s)	75, 132
Eco47I	GGWCC	1 cut(s)	688
Eco72I	CACGTG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	354, 684
EcoT14I	CCWWGG	2 cut(s)	75, 132
ErhI	CCWWGG	2 cut(s)	75, 132
FaeI	CATG	5 cut(s)	107, 176, 224, 553, 949
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	103, 172, 220, 549, 945
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	3 cut(s)	21, 411, 906
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	21, 411, 906
FspBI	CTAG	3 cut(s)	431, 710, 909
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	21, 411, 906
GsaI	CCCAGC	2 cut(s)	461, 728
HaeIII	GGCC	5 cut(s)	74, 164, 438, 905, 944
HapII	CCGG	5 cut(s)	435, 462, 597, 882, 1009
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	107, 176, 224, 553, 949
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HpaII	CCGG	5 cut(s)	435, 462, 597, 882, 1009
HphI	GGTGA	7 cut(s)	25, 31, 40, 290, 291, 323, 967
Hpy166II	GTNNAC	7 cut(s)	48, 427, 508, 602, 772, 820, 895
Hpy188I	TCNGA	5 cut(s)	70, 323, 496, 853, 916
Hpy188III	TCNNGA	4 cut(s)	173, 329, 416, 952
Hpy8I	GTNNAC	7 cut(s)	48, 427, 508, 602, 772, 820, 895
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	5 cut(s)	46, 71, 77, 690, 980
HpyCH4III	ACNGT	2 cut(s)	382, 476
HpyCH4IV	ACGT	2 cut(s)	487, 760
HpyCH4V	TGCA	2 cut(s)	602, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 419, 752
HpyF3I	CTNAG	3 cut(s)	153, 320, 666
HpySE526I	ACGT	2 cut(s)	487, 760
Hsp92II	CATG	5 cut(s)	107, 176, 224, 553, 949
HspAI	GCGC	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	948
Kzo9I	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
LmnI	GCTCC	2 cut(s)	195, 884
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	431, 710, 909
MaeII	ACGT	2 cut(s)	487, 760
MaeIII	GTNAC	3 cut(s)	446, 470, 523
MalI	GATC	7 cut(s)	183, 254, 347, 780, 855, 873, 950
MboI	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
MboII	GAAGA	1 cut(s)	590
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	3 cut(s)	374, 604, 725
MluCI	AATT	4 cut(s)	15, 633, 888, 932
MmeI	TCCRAC	2 cut(s)	240, 806
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	636
MspI	CCGG	5 cut(s)	435, 462, 597, 882, 1009
MspR9I	CCNGG	3 cut(s)	356, 686, 1010
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	356, 686
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	410, 419, 752
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	1 cut(s)	1010
NdeII	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
NgoMIV	GCCGGC	1 cut(s)	434
NheI	GCTAGC	2 cut(s)	709, 908
NlaIII	CATG	5 cut(s)	107, 176, 224, 553, 949
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	446, 470
NspI	RCATGY	2 cut(s)	107, 553
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	2 cut(s)	103, 549
PdiI	GCCGGC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	22, 412, 907
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
Ppu21I	YACGTR	2 cut(s)	488, 761
PscI	ACATGT	2 cut(s)	103, 549
Psp6I	CCWGG	2 cut(s)	354, 684
PspCI	CACGTG	1 cut(s)	488
PspFI	CCCAGC	2 cut(s)	457, 724
PspGI	CCWGG	2 cut(s)	354, 684
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	2 cut(s)	163, 688
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	4 cut(s)	763, 812, 861, 896
RsaNI	GTAC	4 cut(s)	762, 811, 860, 895
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	3 cut(s)	21, 411, 906
Sau3AI	GATC	7 cut(s)	181, 252, 345, 778, 853, 871, 948
Sau96I	GGNCC	2 cut(s)	163, 688
ScaI	AGTACT	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	356, 686, 1010
SduI	GDGCHC	3 cut(s)	374, 604, 725
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	329, 938
SmoI	CTYRAG	2 cut(s)	329, 938
SnaBI	TACGTA	1 cut(s)	761
Sse9I	AATT	4 cut(s)	15, 633, 888, 932
SsiI	CCGC	3 cut(s)	21, 208, 906
SspMI	CTAG	3 cut(s)	431, 710, 909
StyD4I	CCNGG	3 cut(s)	354, 684, 1008
StyI	CCWWGG	2 cut(s)	75, 132
TaaI	ACNGT	2 cut(s)	382, 476
TaiI	ACGT	2 cut(s)	490, 763
TaqI	TCGA	3 cut(s)	122, 251, 801
TasI	AATT	4 cut(s)	15, 633, 888, 932
TatI	WGTACW	3 cut(s)	810, 859, 894
TauI	GCSGC	2 cut(s)	23, 908
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	446, 470
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	2 cut(s)	446, 470
TspDTI	ATGAA	2 cut(s)	161, 999
Van91I	CCANNNNNTGG	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	2 cut(s)	107, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XspI	CTAG	3 cut(s)	431, 710, 909
ZrmI	AGTACT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.