Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8215092.1

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

111 .. 587

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8215092.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggagctaatcacagggagaaaagcacttgacgagagccagcctgaggagagcatgcaccttgtcacatggtttcggaggatttttattaataaggactcgttccgcaaggccattgatccaacaattgatcttgacgagggaacacttgccagtgtgagcactgttgcagagctagcaggtcactgctctgcaagagagccctatcaaaggcctgacatgagccatgctgttaatgttctatcttctctggtggagctttggaaaccaagtgatcaaagctctgaagacatatatggtatcgatcttgaaatgtcattgccacaagcacttaagaaatggcaggcttatgaaggtaggagcaatatggaatcctcttcgtcatcacttcttccaagctcggacaatacccagactagcatccccactcgcccctatggctttgccgagtctttcacatctgcagatgggaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.62

Weight (kDa)

4.76

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	46, 210
AflII	CTTAAG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	5 cut(s)	7, 175, 259, 282, 399
AluI	AGCT	5 cut(s)	7, 175, 259, 282, 399
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	111, 212
AseI	ATTAAT	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	1 cut(s)	461
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	176, 417
BfmI	CTRYAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	438
BmsI	GCATC	1 cut(s)	429
BmtI	GCTAGC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 210
Bse1I	ACTGG	1 cut(s)	153
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	46, 210
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	113, 214
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	46, 210
BsnI	GGCC	2 cut(s)	113, 214
Bsp1286I	GDGCHC	2 cut(s)	164, 204
Bsp143I	GATC	4 cut(s)	118, 130, 274, 304
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	113, 214
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	113
BspTI	CTTAAG	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	118, 130, 274, 304
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	41, 56, 177, 345
BstDEI	CTNAG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	121, 133, 277, 307
BstMBI	GATC	4 cut(s)	118, 130, 274, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 438
BstNSI	RCATGY	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	113, 214
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	3 cut(s)	160, 162, 184
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	4 cut(s)	41, 56, 177, 345
ClaI	ATCGAT	1 cut(s)	303
CviAII	CATG	4 cut(s)	55, 69, 220, 227
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	4 cut(s)	120, 132, 276, 306
DpnII	GATC	4 cut(s)	118, 130, 274, 304
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	4 cut(s)	58, 72, 223, 230
FatI	CATG	4 cut(s)	54, 68, 219, 226
FbaI	TGATCA	1 cut(s)	274
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	176, 417
HaeIII	GGCC	2 cut(s)	113, 214
Hin1II	CATG	4 cut(s)	58, 72, 223, 230
HinfI	GANTC	3 cut(s)	98, 371, 449
Hpy188I	TCNGA	3 cut(s)	78, 286, 403
Hpy188III	TCNNGA	2 cut(s)	134, 308
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	58, 170, 194, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 438
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	58, 72, 223, 230
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	118, 130, 274, 304
LmnI	GCTCC	3 cut(s)	4, 256, 360
LpnPI	CCDG	8 cut(s)	53, 57, 165, 166, 228, 236, 329, 425
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	176, 417
MaeIII	GTNAC	2 cut(s)	64, 182
MalI	GATC	4 cut(s)	120, 132, 276, 306
MboI	GATC	4 cut(s)	118, 130, 274, 304
MboII	GAAGA	4 cut(s)	237, 299, 369, 383
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	164, 204
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	92, 458
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	40, 72, 133, 385, 465
MseI	TTAA	3 cut(s)	90, 234, 333
MspCI	CTTAAG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	176, 438
NdeII	GATC	4 cut(s)	118, 130, 274, 304
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	4 cut(s)	58, 72, 223, 230
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	64, 182
NspI	RCATGY	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	371
PleI	GAGTC	2 cut(s)	92, 457
PpsI	GAGTC	2 cut(s)	92, 457
PshBI	ATTAAT	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	90, 234, 333
Sau3AI	GATC	4 cut(s)	118, 130, 274, 304
SchI	GAGTC	2 cut(s)	92, 458
SduI	GDGCHC	2 cut(s)	164, 204
SetI	ASST	9 cut(s)	9, 63, 177, 184, 261, 284, 358, 401, 476
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	126
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	176, 417
StuI	AGGCCT	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	90, 234, 333
Tru9I	TTAA	3 cut(s)	90, 234, 333
TscAI	CASTG	3 cut(s)	160, 169, 191
TseFI	GTSAC	2 cut(s)	64, 182
Tsp45I	GTSAC	2 cut(s)	64, 182
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	160, 169, 191
Vha464I	CTTAAG	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	2 cut(s)	176, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.