Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

37319251 .. 37319691

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGTTGATGAGTGGTCGAAAAGCTGTAGATGATACCATGCCGGATGAAAGGTCTCATTTGGTGTCATGGTTTCGCAGAGTCCTTGTCAACAAAGAAAACATTCCCAACTCCATCGACCAAACTCTTGACGCTGATGAGGAGACAATGGAGAGCATATACAAAGTTGCTGAGCTTGCAGAACACTGCACAGCTCCTGAGTCATATCAGAGACCAGACATGGGCCATGCAGTCAACATCTTGGGTCCTCTTGTTGAGCACTGGAAACCTACAACCCACGAAGAAGATGAAGGTAATTCAAGGATGTTTGATGATCTGTCCTATATGCACATGAACCTTTCTCAAGCAGCGGAAAGATGGCAAGCCGATGAAGGTACTTCAAGGATGTTTGATGATCTGTCCTCTAGCCATACTCAATCAAGCATCCCTTCAAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

4.66

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	300, 381, 432
AluBI	AGCT	3 cut(s)	26, 175, 194
AluI	AGCT	3 cut(s)	26, 175, 194
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	60, 137, 205
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	223, 245
AvaII	GGWCC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	2 cut(s)	122, 351
BcoDI	GTCTC	3 cut(s)	60, 137, 205
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	223, 245
BmiI	GGNNCC	1 cut(s)	246
BmsI	GCATC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	60, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	266
BseGI	GGATG	4 cut(s)	52, 309, 390, 423
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	162, 189
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	3 cut(s)	60, 137, 205
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	2 cut(s)	60, 205
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	313, 394
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	163, 190
BspLI	GGNNCC	1 cut(s)	246
BspTNI	GGTCTC	2 cut(s)	60, 205
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	313, 394
BstC8I	GCNNGC	2 cut(s)	177, 363
BstDEI	CTNAG	2 cut(s)	171, 198
BstF5I	GGATG	4 cut(s)	52, 309, 390, 423
BstKTI	GATC	2 cut(s)	316, 397
BstMAI	GTCTC	3 cut(s)	60, 137, 205
BstMBI	GATC	2 cut(s)	313, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	4 cut(s)	52, 309, 390, 423
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	184, 259
Cac8I	GCNNGC	2 cut(s)	177, 363
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	223, 245
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	6 cut(s)	40, 69, 220, 227, 331, 438
CviJI	RGCY	6 cut(s)	26, 175, 194, 225, 365, 408
CviKI_1	RGCY	6 cut(s)	26, 175, 194, 225, 365, 408
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	2 cut(s)	171, 198
DpnI	GATC	2 cut(s)	315, 396
DpnII	GATC	2 cut(s)	313, 394
Eco31I	GGTCTC	2 cut(s)	60, 205
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	245
FaeI	CATG	6 cut(s)	43, 72, 223, 230, 334, 441
FalI	AAGNNNNNCTT	1 cut(s)	412
FatI	CATG	6 cut(s)	39, 68, 219, 226, 330, 437
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	4 cut(s)	59, 316, 397, 410
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	6 cut(s)	43, 72, 223, 230, 334, 441
HincII	GTYRAC	2 cut(s)	91, 235
HindII	GTYRAC	2 cut(s)	91, 235
HinfI	GANTC	2 cut(s)	81, 200
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	91, 235
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	128, 197
Hpy8I	GTNNAC	2 cut(s)	91, 235
HpyAV	CCTTC	3 cut(s)	284, 365, 438
HpyCH4V	TGCA	4 cut(s)	179, 189, 230, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	171, 198
Hsp92II	CATG	6 cut(s)	43, 72, 223, 230, 334, 441
Kzo9I	GATC	2 cut(s)	313, 394
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	57, 210, 228, 247
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	405
MalI	GATC	2 cut(s)	315, 396
MboI	GATC	2 cut(s)	313, 394
MboII	GAAGA	2 cut(s)	293, 296
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	2 cut(s)	90, 209
MnlI	CCTC	3 cut(s)	133, 258, 412
MroXI	GAANNNNTTC	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	313, 394
NlaIII	CATG	6 cut(s)	43, 72, 223, 230, 334, 441
NlaIV	GGNNCC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	89, 208
PpsI	GAGTC	2 cut(s)	89, 208
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	223, 245
PspPPI	RGGWCCY	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	313, 394
Sau96I	GGNCC	2 cut(s)	223, 245
SchI	GAGTC	2 cut(s)	90, 209
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	28, 56, 177, 196, 271, 295, 339, 376
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	405
TaqI	TCGA	2 cut(s)	19, 117
TasI	AATT	1 cut(s)	295
TscAI	CASTG	2 cut(s)	191, 266
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	63, 303, 347, 384
TspRI	CASTG	2 cut(s)	191, 266
VpaK11BI	GGWCC	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.