Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

893177 .. 893581

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCATTAACAAGGATACATTCCGGAAGGCCATTGATCCAACGATTGATCTCAATGAGGAAACTCTTTCTAGTATTAACACCGTCGCTGACCTTGCTGGGCATTGCAGCGCAAGGGAGCCCTACCAGAGGCCCGACATGGGTCATGCGGTCAATGTTCTTTCGTCACTCGTTGAGCATTGGAAACCATCTGAAGCCGAAGATTCTGATGATATGTATGGAATTGACCTCGAAATGACCTTACCACAAGCACTAAAGAAGTGGCAGGCTTTTGAAGGCAATAGCAACCTTGATGAGTCTTCATCTTCTTCATCGTTCTTTGCCAGCGGAGACAACACCCAAACCAGTATACCTACTCGCCCATCTGGATTTGCAGAATCGTTTACATCATCGGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

4.4

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	349
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	3 cut(s)	149, 327, 400
AclWI	GGATC	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	129, 140
AgsI	TTSAA	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	24
AoxI	GGCC	2 cut(s)	30, 131
ApeKI	GCWGC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	3 cut(s)	196, 370, 389
BciVI	GTATCC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 140
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	103
BseAI	TCCGGA	1 cut(s)	24
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	129, 140
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	32, 133
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	129, 140
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	32, 133
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	37, 49
BspACI	CCGC	3 cut(s)	149, 327, 400
BspANI	GGCC	2 cut(s)	32, 133
BspEI	TCCGGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	37, 49
BssNAI	GTATAC	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	267, 325
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	40, 52
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	37, 49
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstPAI	GACNNNNGTC	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	291
BstZ17I	GTATAC	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	32, 133
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	267, 325
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	132
CviAII	CATG	2 cut(s)	139, 146
CviJI	RGCY	5 cut(s)	32, 121, 133, 197, 269
CviKI_1	RGCY	5 cut(s)	32, 121, 133, 197, 269
DpnI	GATC	2 cut(s)	39, 51
DpnII	GATC	2 cut(s)	37, 49
Eco24I	GRGCYC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	142, 149
FaiI	YATR	5 cut(s)	140, 147, 215, 219, 350
FatI	CATG	2 cut(s)	138, 145
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	109
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	32, 133
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	142, 149
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	3 cut(s)	203, 296, 377
HpaII	CCGG	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	350, 384
Hpy188I	TCNGA	3 cut(s)	193, 208, 394
Hpy188III	TCNNGA	2 cut(s)	25, 366
Hpy8I	GTNNAC	2 cut(s)	350, 384
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	22, 269
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	108, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	142, 149
HspAI	GCGC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	37, 49
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	38, 84, 140, 251, 337, 351, 358
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	39, 51
MboI	GATC	2 cut(s)	37, 49
MboII	GAAGA	4 cut(s)	212, 291, 297, 300
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	52, 123, 239
MroI	TCCGGA	1 cut(s)	24
MseI	TTAA	2 cut(s)	9, 78
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	37, 49
NlaIII	CATG	2 cut(s)	142, 149
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	203, 377
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	9, 78
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	37, 49
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	96, 231, 242, 291, 355
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	3 cut(s)	149, 327, 400
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	203, 377
Tru1I	TTAA	2 cut(s)	9, 78
Tru9I	TTAA	2 cut(s)	9, 78
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	291, 300
XagI	CCTNNNNNAGG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.