Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349657.1

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

90 .. 596

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggggaaaatcacaactaaagtagatgtgttcagctttggcgtagtgttaatggagcttgtgactggattaatggcactggatgagaaccggcccgaggaaagtcgttacttggctgagtggttttggcgagtcaagtcaagcaaggagaagcttatggctgcagttgatccaactattgaggttactgaagaaacttttgagagcatctccttaatagctgatcttgctggacattgcactgcgagggagccaacacatcggcctgacatgggacatgcagtgaacgtgctaggccaacttgttgaaaagtggaaaccagttgatgaaggatcagaaagtttctctggaatcgattataatcaacctctttcccagatgctaaaagtttggcagcaagcagaaagcagagaggtcagctatactagcctggaggacagcaagggaagtattcctgctagacccgctggatttgcagattccttcacttctgccgatggtcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

168

Amino Acids

18.67

Weight (kDa)

4.77

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	164, 340
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	97, 272
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	5 cut(s)	36, 58, 154, 221, 420
AluI	AGCT	5 cut(s)	36, 58, 154, 221, 420
AlwI	GGATC	2 cut(s)	164, 340
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	92, 263, 295
ApeKI	GCWGC	2 cut(s)	161, 394
AseI	ATTAAT	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	148, 406
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	431
BfaI	CTAG	3 cut(s)	293, 426, 459
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	162, 395
BlsI	GCNGC	2 cut(s)	163, 396
Bme1390I	CCNGG	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	216, 369
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 272
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	3 cut(s)	70, 84, 320
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	97, 272
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	70, 84, 320
BseXI	GCAGC	2 cut(s)	148, 406
BshFI	GGCC	3 cut(s)	94, 265, 297
BshVI	ATCGAT	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	97, 272
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	94, 265, 297
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	169, 223, 332
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	3 cut(s)	94, 265, 297
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	164, 340
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	70, 84, 320
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	169, 223, 332
Bst2UI	CCWGG	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	172, 226, 335
BstMBI	GATC	3 cut(s)	169, 223, 332
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 426, 464, 473
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	148, 406
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	94, 265, 297
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	240, 288
BtsIMutI	CAGTG	3 cut(s)	77, 240, 288
Cac8I	GCNNGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	354
CviAII	CATG	2 cut(s)	271, 278
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	3 cut(s)	171, 225, 334
DpnII	GATC	3 cut(s)	169, 223, 332
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	274, 281
FaiI	YATR	5 cut(s)	158, 272, 279, 360, 423
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	270, 277
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	162, 395
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	162, 395
FspBI	CTAG	3 cut(s)	293, 426, 459
GluI	GCNGC	2 cut(s)	162, 395
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	94, 265, 297
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	2 cut(s)	274, 281
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	132, 351, 479
HpaII	CCGG	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	323, 493
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	164, 240, 281, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 426, 464, 473
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	274, 281
Kzo9I	GATC	3 cut(s)	169, 223, 332
LmnI	GCTCC	2 cut(s)	55, 250
Lsp1109I	GCAGC	2 cut(s)	148, 406
LweI	GCATC	2 cut(s)	216, 369
MaeI	CTAG	3 cut(s)	293, 426, 459
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	61, 107, 184
MalI	GATC	3 cut(s)	171, 225, 334
MboI	GATC	3 cut(s)	169, 223, 332
MboII	GAAGA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	91, 175, 240, 378, 406, 427
MseI	TTAA	3 cut(s)	50, 71, 215
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	227, 426, 464, 473
NdeII	GATC	3 cut(s)	169, 223, 332
NlaIII	CATG	2 cut(s)	274, 281
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	351, 479
PkrI	GCNGC	2 cut(s)	163, 396
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	50, 71, 215
SatI	GCNGC	2 cut(s)	162, 395
Sau3AI	GATC	3 cut(s)	169, 223, 332
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	431
SetI	ASST	9 cut(s)	38, 60, 156, 186, 223, 291, 370, 417, 422
SfaNI	GCATC	2 cut(s)	216, 369
SfcI	CTRYAG	1 cut(s)	162
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	3 cut(s)	293, 426, 459
StyD4I	CCNGG	1 cut(s)	429
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	354, 502
TfiI	GAWTC	2 cut(s)	351, 479
Tru1I	TTAA	3 cut(s)	50, 71, 215
Tru9I	TTAA	3 cut(s)	50, 71, 215
TscAI	CASTG	3 cut(s)	84, 247, 288
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	161, 394
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	3 cut(s)	84, 247, 288
VspI	ATTAAT	1 cut(s)	71
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	3 cut(s)	293, 426, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.