Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

247150 .. 247686

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggtatcagcaactggacggatgacgttcaaggtagatgtgtatagcttcggagtaatattaatggagttgatcacgggaagaaaagcaattgacaatagccagcctgaggagagttgtcacctagtgacaaagctcatgattaaaacagatgcactcccagagatggttgatccaagaattaatgtcaatgaggaaacaatttctagtattagtacagttgctgagcttgctggtcatcgcagcgcaagggagccgtaccaaaggcctgatataggtcatgcagtcaatgtactttcatcgcttgttgagcagtggaagccatctaaacaagaagattttgatgagatggatgcaatcaacttcgatgtgccgttaaatgaagcaataaagatgtggcaggctgctgagggcaaaagcaatatttatgaatcctcatcttcatcaatctttcctagaggggataccacccagaccagcattcctaatcggccttcaggatttgcagagtcgtttacatcatctgatgggtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

4.73

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	3 cut(s)	217, 260, 294
AfiI	CCNNNNNNNGG	3 cut(s)	109, 166, 275
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	3 cut(s)	48, 136, 229
AluI	AGCT	3 cut(s)	48, 136, 229
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	2 cut(s)	14, 224
AoxI	GGCC	2 cut(s)	266, 491
ApeKI	GCWGC	2 cut(s)	243, 404
AseI	ATTAAT	2 cut(s)	62, 183
AspLEI	GCGC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	255, 391
BccI	CCATC	4 cut(s)	160, 331, 343, 521
BceAI	ACGGC	2 cut(s)	241, 358
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	3 cut(s)	125, 207, 456
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	2 cut(s)	244, 405
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	2 cut(s)	245, 406
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	2 cut(s)	142, 343
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 166, 275
Bse1I	ACTGG	1 cut(s)	19
Bse21I	CCTNAGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	27, 358
BseLI	CCNNNNNNNGG	3 cut(s)	109, 166, 275
BseMII	CTCAG	3 cut(s)	99, 216, 399
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	255, 391
BshFI	GGCC	2 cut(s)	268, 493
BslI	CCNNNNNNNGG	3 cut(s)	109, 166, 275
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	268, 493
Bsp143I	GATC	2 cut(s)	72, 172
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	268, 493
BspCNI	CTCAG	3 cut(s)	100, 217, 400
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	72, 172
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	104, 231, 402
BstDEI	CTNAG	3 cut(s)	108, 225, 408
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	27, 358
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	75, 175
BstMBI	GATC	2 cut(s)	72, 172
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 310, 319
BstV1I	GCAGC	2 cut(s)	255, 391
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	268, 493
BtgZI	GCGATG	2 cut(s)	224, 285
BtsCI	GGATG	2 cut(s)	27, 358
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	3 cut(s)	104, 231, 402
CaiI	CAGNNNCTG	2 cut(s)	14, 224
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	216, 259, 293
CviAII	CATG	2 cut(s)	139, 281
CviQI	GTAC	3 cut(s)	216, 259, 293
DdeI	CTNAG	3 cut(s)	108, 225, 408
DpnI	GATC	2 cut(s)	74, 174
DpnII	GATC	2 cut(s)	72, 172
DraIII	CACNNNGTG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	142, 284
FaiI	YATR	5 cut(s)	45, 140, 275, 282, 429
FatI	CATG	2 cut(s)	138, 280
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	244, 405
FokI	GGATG	2 cut(s)	34, 365
Fsp4HI	GCNGC	2 cut(s)	244, 405
FspBI	CTAG	3 cut(s)	125, 207, 456
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	244, 405
HaeIII	GGCC	2 cut(s)	268, 493
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	142, 284
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	431, 509
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	2 cut(s)	53, 526
Hpy188III	TCNNGA	2 cut(s)	139, 498
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	155, 284, 356, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 310, 319
HpyF3I	CTNAG	3 cut(s)	108, 225, 408
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	142, 284
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	72, 172
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	116, 120, 174, 219, 282, 386, 483, 485, 490
Lsp1109I	GCAGC	2 cut(s)	255, 391
LweI	GCATC	2 cut(s)	142, 343
MaeI	CTAG	3 cut(s)	125, 207, 456
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	119, 127
MalI	GATC	2 cut(s)	74, 174
MboI	GATC	2 cut(s)	72, 172
MboII	GAAGA	3 cut(s)	93, 347, 432
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	3 cut(s)	90, 180, 201
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	103, 187, 403, 445, 452
MseI	TTAA	4 cut(s)	62, 144, 183, 377
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	230, 310, 319
NdeII	GATC	2 cut(s)	72, 172
NlaIII	CATG	2 cut(s)	142, 284
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	119, 127
PagI	TCATGA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	245, 406
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PshBI	ATTAAT	2 cut(s)	62, 183
PspN4I	GGNNCC	1 cut(s)	255
PstNI	CAGNNNCTG	2 cut(s)	14, 224
RsaI	GTAC	3 cut(s)	217, 260, 294
RsaNI	GTAC	3 cut(s)	216, 259, 293
SaqAI	TTAA	4 cut(s)	62, 144, 183, 377
SatI	GCNGC	2 cut(s)	244, 405
Sau3AI	GATC	2 cut(s)	72, 172
SchI	GAGTC	1 cut(s)	518
SetI	ASST	7 cut(s)	29, 36, 50, 126, 138, 231, 280
SfaNI	GCATC	2 cut(s)	142, 343
Sse9I	AATT	3 cut(s)	90, 180, 201
SseBI	AGGCCT	1 cut(s)	268
SspI	AATATT	2 cut(s)	60, 424
SspMI	CTAG	3 cut(s)	125, 207, 456
StuI	AGGCCT	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	90, 180, 201
TatI	WGTACW	2 cut(s)	215, 292
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	4 cut(s)	62, 144, 183, 377
Tru9I	TTAA	4 cut(s)	62, 144, 183, 377
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	2 cut(s)	119, 127
TseI	GCWGC	2 cut(s)	243, 404
Tsp45I	GTSAC	2 cut(s)	119, 127
TspDTI	ATGAA	4 cut(s)	288, 396, 432, 444
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	320
VspI	ATTAAT	2 cut(s)	62, 183
XagI	CCTNNNNNAGG	1 cut(s)	273
XspI	CTAG	3 cut(s)	125, 207, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.