Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

29123468 .. 29124416

Gene Structure 949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATCGACAAGTGGACGTTAATGTGTGTCCTCGACTCCTCGTCAAGTCATCATATCCCATCCCAAGTCCGAGGAATCCAGGATCCACTCCAGTCTATCATTTTTCTTTTCTTCTTCTTCTTCTTCTTCTATCTACCAACAATGTGGAAGTTCATAGTTCAAATTGCTACCCAGTTGAGCTGCCTCTTCAACTACTTGCTTTTCTGTTCTTTTGCCAGGCCTTACTACGAGTATGAATCACTAGCAGAAGCTACAGAGACTACTCTTAGCACAGTCCACTACAAGAGCCCCAACACTGCTGTGAGTTTTGAAGAAGAATGTGCTGTGTGTCTAACCAAAATTGAGGAAGGAGAAGAGATGAGAGAACTGAGATGTGCTCATCTCTTTCATAAAGCTTGCTTGGACCGTTGGACAGGTCTTAATCATGTTACATGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAGTAAGCAAAGAATCCCAGTTTCAGGTCGAAGTGCTTCGTTTCAGGTTCTGCTCTTTTCGGTTCGATGAAGATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

187

Amino Acids

22.07

Weight (kDa)

5.67

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	102 - 149	3.7e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	106 - 149	2.6e-12	Ring finger domain
zf-RING_11	PF17123	106 - 134	6.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	106 - 148	2.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	107 - 148	4.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	77, 90
AfiI	CCNNNNNNNGG	2 cut(s)	444, 487
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	161, 190, 311
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	78, 215
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	4 cut(s)	180, 251, 395, 458
AluI	AGCT	4 cut(s)	180, 251, 395, 458
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	77, 90
AlwNI	CAGNNNCTG	1 cut(s)	513
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	80, 217
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	242, 455
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	80, 217
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	80, 217
BmrI	ACTGGG	3 cut(s)	166, 458, 475
BmuI	ACTGGG	3 cut(s)	166, 458, 475
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 487
Bse1I	ACTGG	4 cut(s)	91, 172, 464, 481
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	80, 217
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	444, 487
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	4 cut(s)	91, 172, 464, 481
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	444, 487
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	290, 379
Bsp143I	GATC	3 cut(s)	3, 82, 535
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	77, 90
BsrI	ACTGG	4 cut(s)	91, 172, 464, 481
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	3, 82, 535
Bst2UI	CCWGG	2 cut(s)	80, 217
Bst4CI	ACNGT	2 cut(s)	274, 407
Bst6I	CTCTTC	2 cut(s)	191, 348
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	266, 368
BstF5I	GGATG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	3 cut(s)	6, 85, 538
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	3, 82, 535
BstNI	CCWGG	2 cut(s)	80, 217
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	78, 215
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	513
CfoI	GCGC	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	403
CviAII	CATG	3 cut(s)	425, 432, 546
CviJI	RGCY	6 cut(s)	180, 220, 251, 288, 395, 458
CviKI_1	RGCY	6 cut(s)	180, 220, 251, 288, 395, 458
DdeI	CTNAG	2 cut(s)	266, 368
DpnI	GATC	3 cut(s)	5, 84, 537
DpnII	GATC	3 cut(s)	3, 82, 535
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	191, 348
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	2 cut(s)	191, 348
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	78, 215
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	3 cut(s)	428, 435, 549
FaiI	YATR	7 cut(s)	54, 155, 234, 390, 426, 433, 547
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	424, 431, 545
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	242, 455
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	3 cut(s)	428, 435, 549
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	4 cut(s)	35, 75, 236, 476
HpaII	CCGG	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	15, 277
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	2 cut(s)	15, 277
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	274, 407
HpyCH4IV	ACGT	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	266, 368
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	428, 435, 549
HspAI	GCGC	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	3, 82, 535
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	242, 455
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	3 cut(s)	5, 84, 537
MboI	GATC	3 cut(s)	3, 82, 535
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	290, 379
MluCI	AATT	2 cut(s)	162, 339
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	5 cut(s)	41, 49, 65, 194, 337
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	2 cut(s)	20, 420
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	2 cut(s)	80, 217
MvaI	CCWGG	2 cut(s)	80, 217
NdeII	GATC	3 cut(s)	3, 82, 535
NlaIII	CATG	3 cut(s)	428, 435, 549
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	435
OliI	CACNNNNGTG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	220
PciI	ACATGT	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	75, 236, 476
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PscI	ACATGT	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	78, 215
PspGI	CCWGG	2 cut(s)	78, 215
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	20, 420
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	3, 82, 535
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	80, 217
SduI	GDGCHC	2 cut(s)	290, 379
SetI	ASST	8 cut(s)	20, 182, 253, 397, 418, 460, 492, 512
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	162, 339
SseBI	AGGCCT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	242, 455
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	78, 215
TaaI	ACNGT	2 cut(s)	274, 407
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	4 cut(s)	6, 33, 492, 528
TasI	AATT	2 cut(s)	162, 339
TfiI	GAWTC	3 cut(s)	75, 236, 476
Tru1I	TTAA	2 cut(s)	20, 420
Tru9I	TTAA	2 cut(s)	20, 420
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	142, 249, 377, 546
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	242, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.