Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

2879711 .. 2880163

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTGGAAGTACATACATCTAACCTACACCCACATAACCTGGCTTTTCAACTTCTTGGTTTACCATTCCTTCTCCATACATTATGATCACTGCTTTGATGAACTATTGCCTGCCGACCAAGCCACAGAGTTATCACTTACCACAGTCCGGTACAAACCCAATGCTGGGACGAATTCGGAGAGTAGTACTGCCGAATGTTGTGTGTGTCTATGCAAAATTGACGAAGGAGAAGAGATTAGAGAACTGATATGCGCTCATCTCTTTCATAAACCATGCTTGGACGGGTGGACTGGATTTAAATGTGCAACGTGTCCGATTTGCCGCAGTCGCCTAGCTCCACCAAGAAGCACACAACTCCAGCAGCAGTTTGATGGACAAGTGGAAGTGCTGCTGTTCCAGTTTTGTTCTTTCAGATCGGATAGTGATCGTGGCGATAGATGGTGGCTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

151

Amino Acids

17.54

Weight (kDa)

5.93

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	65 - 108	6e-10	Ring finger domain
zf-RING_11	PF17123	65 - 93	9.3e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	3 cut(s)	11, 152, 187
AfiI	CCNNNNNNNGG	3 cut(s)	147, 164, 165
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	361, 388, 445
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	373, 375, 432
BccI	CCATC	2 cut(s)	365, 432
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	4 cut(s)	322, 362, 389, 446
BlsI	GCNGC	4 cut(s)	323, 363, 390, 447
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 164, 165
Bse1I	ACTGG	2 cut(s)	295, 397
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	147, 164, 165
BseNI	ACTGG	2 cut(s)	295, 397
BseXI	GCAGC	3 cut(s)	373, 375, 432
BseYI	CCCAGC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	147, 164, 165
BsmFI	GGGAC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	85, 413, 424
BspACI	CCGC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	295, 397
BssMI	GATC	3 cut(s)	85, 413, 424
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	88, 416, 427
BstMBI	GATC	3 cut(s)	85, 413, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 327
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	373, 375, 432
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	10, 151, 186
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	4 cut(s)	43, 122, 335, 445
CviKI_1	RGCY	4 cut(s)	43, 122, 335, 445
CviQI	GTAC	3 cut(s)	10, 151, 186
DpnI	GATC	3 cut(s)	87, 415, 426
DpnII	GATC	3 cut(s)	85, 413, 424
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	38
FaeI	CATG	1 cut(s)	276
FaiI	YATR	8 cut(s)	14, 35, 77, 84, 211, 250, 267, 274
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	322, 362, 389, 446
Fsp4HI	GCNGC	4 cut(s)	322, 362, 389, 446
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	4 cut(s)	322, 362, 389, 446
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	341
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	61, 288
Hpy188I	TCNGA	4 cut(s)	178, 315, 413, 418
Hpy8I	GTNNAC	2 cut(s)	61, 288
HpyAV	CCTTC	2 cut(s)	79, 218
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	213, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 327
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	276
HspAI	GCGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 413, 424
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	8 cut(s)	25, 52, 123, 150, 161, 276, 371, 410
Lsp1109I	GCAGC	3 cut(s)	373, 375, 432
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	308
MalI	GATC	3 cut(s)	87, 415, 426
MboI	GATC	3 cut(s)	85, 413, 424
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	2 cut(s)	172, 216
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	119, 327
NdeII	GATC	3 cut(s)	85, 413, 424
NlaIII	CATG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	323, 363, 390, 447
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	38
RsaI	GTAC	3 cut(s)	11, 152, 187
RsaNI	GTAC	3 cut(s)	10, 151, 186
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	322, 362, 389, 446
Sau3AI	GATC	3 cut(s)	85, 413, 424
ScaI	AGTACT	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	4 cut(s)	26, 41, 311, 337
SmiI	ATTTAAAT	1 cut(s)	298
Sse9I	AATT	2 cut(s)	172, 216
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	38
SwaI	ATTTAAAT	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	311
TasI	AATT	2 cut(s)	172, 216
TatI	WGTACW	2 cut(s)	9, 185
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	3 cut(s)	361, 388, 445
TspDTI	ATGAA	2 cut(s)	114, 254
TspRI	CASTG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	172
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.