Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

3061823 .. 3062266

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAAACCATGTGGAAGTATATACATCTAACTTTCACCCACTTCAGCTGGCTGTTCAACTTCTTGCTCTACCATTCCTTCTCCAAACATTATGATCACTATTTTGACGAAGCCACAGACATATCACTTACCACAGTCCAGTATAAACCCAGTCCCGAGGCGAATTCGGAGACTAGTACCGCGGAATGTGCTGTGTGTCTATGCAAAATCGAAGAAGGAGAAGAGATTAGAGAACTGAGATGTGCTCATCTCTTTCATAAACCATGCTTGGACTGGTGGACTGGATTTAAGCATGCCAATTGTCCGATTTGCCGCAGTCGTCTAGCTCCACCGAGAAGCACACAACTCCATCAGCAGTTAGATGAACAAGTGGAAGTGTTGGTGTTTAAGTTTTGTTCTTTCAGCTCGGATAGTGATCGTGGCGATAGATGGTGGCTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

148

Amino Acids

17.53

Weight (kDa)

6.11

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	62 - 105	2.3e-11	Ring finger domain
zf-RING_11	PF17123	62 - 90	6.8e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AciI	CCGC	3 cut(s)	180, 182, 313
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	58
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	3 cut(s)	48, 326, 405
AluI	AGCT	3 cut(s)	48, 326, 405
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	2 cut(s)	357, 423
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	164
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	174, 323
BisI	GCNGC	2 cut(s)	313, 437
BlsI	GCNGC	2 cut(s)	314, 438
BmeT110I	CYCGRG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	156, 180
Bse1I	ACTGG	4 cut(s)	139, 150, 278, 286
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	156, 180
BseJI	GATNNNNATC	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	4 cut(s)	139, 150, 278, 286
BseXI	GCAGC	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	94, 415
BspACI	CCGC	3 cut(s)	180, 182, 313
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	182
BsrI	ACTGG	4 cut(s)	139, 150, 278, 286
BssECI	CCNNGG	2 cut(s)	156, 180
BssMI	GATC	2 cut(s)	94, 415
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	50, 294
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	97, 418
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	94, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	296
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	50, 294
Cfr42I	CCGCGG	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	1 cut(s)	28
CviAII	CATG	3 cut(s)	10, 264, 293
CviJI	RGCY	6 cut(s)	48, 52, 113, 326, 405, 436
CviKI_1	RGCY	6 cut(s)	48, 52, 113, 326, 405, 436
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	96, 417
DpnII	GATC	2 cut(s)	94, 415
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	13, 267, 296
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	3 cut(s)	9, 263, 292
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	313, 437
Fsp4HI	GCNGC	2 cut(s)	313, 437
FspBI	CTAG	2 cut(s)	174, 323
GluI	GCNGC	2 cut(s)	313, 437
Hin1II	CATG	3 cut(s)	13, 267, 296
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	169, 306, 409
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	2 cut(s)	88, 209
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	4, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	13, 267, 296
Ksp22I	TGATCA	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	94, 415
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	5 cut(s)	34, 152, 163, 259, 267
Lsp1109I	GCAGC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	174, 323
MalI	GATC	2 cut(s)	96, 417
MboI	GATC	2 cut(s)	94, 415
MboII	GAAGA	2 cut(s)	224, 233
MfeI	CAATTG	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	163, 298
MnlI	CCTC	1 cut(s)	151
MseI	TTAA	2 cut(s)	288, 387
MspA1I	CMGCKG	2 cut(s)	48, 182
MunI	CAATTG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	94, 415
NlaIII	CATG	3 cut(s)	13, 267, 296
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	314, 438
PvuII	CAGCTG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacII	CCGCGG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	288, 387
SatI	GCNGC	2 cut(s)	313, 437
Sau3AI	GATC	2 cut(s)	94, 415
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	3 cut(s)	50, 328, 407
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	173
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	2 cut(s)	163, 298
SsiI	CCGC	3 cut(s)	180, 182, 313
SspMI	CTAG	2 cut(s)	174, 323
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	163, 298
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	288, 387
Tru9I	TTAA	2 cut(s)	288, 387
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	245, 378
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XspI	CTAG	2 cut(s)	174, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.