E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g28501 |
| malus_domestica | MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1 |
| prunus_persica | Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1 |
| pyrus_communis | pycom13g04530 pycom13g04540 pycom16g04530 |
| rosa_chinensis | RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881 |
| rosa_laevigata | RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878 |
| rosa_multiflora | Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00377630 |
| rosa_rugosa | Rorug01G0052300 Rorug01G0052400 Rorug04G0294400 |
| rosa_samantha | Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300 |
| rosa_wichuraiana | Rw1G005650 Rw4G030490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 240 |
| AciI | CCGC | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AcvI | CACGTG | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AflIII | ACRYGT | 1 cut(s) | 131 |
| AgsI | TTSAA | 2 cut(s) | 188, 208 |
| AluBI | AGCT | 2 cut(s) | 95, 158 |
| AluI | AGCT | 2 cut(s) | 95, 158 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspLEI | GCGC | 1 cut(s) | 258 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BbrPI | CACGTG | 1 cut(s) | 132 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmrI | ACTGGG | 1 cut(s) | 175 |
| BmuI | ACTGGG | 1 cut(s) | 175 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 61, 93 |
| Bpu10I | CCTNAGC | 1 cut(s) | 154 |
| BsaAI | YACGTR | 1 cut(s) | 132 |
| BsaBI | GATNNNNATC | 1 cut(s) | 234 |
| Bse1I | ACTGG | 2 cut(s) | 181, 223 |
| Bse8I | GATNNNNATC | 1 cut(s) | 234 |
| BseJI | GATNNNNATC | 1 cut(s) | 234 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseNI | ACTGG | 2 cut(s) | 181, 223 |
| Bsh1236I | CGCG | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| Bsp143I | GATC | 1 cut(s) | 235 |
| Bsp68I | TCGCGA | 1 cut(s) | 240 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 1 cut(s) | 60 |
| BspFNI | CGCG | 1 cut(s) | 240 |
| BsrI | ACTGG | 2 cut(s) | 181, 223 |
| BssMI | GATC | 1 cut(s) | 235 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 89 |
| BstBAI | YACGTR | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 1 cut(s) | 97 |
| BstDEI | CTNAG | 2 cut(s) | 68, 154 |
| BstFNI | CGCG | 1 cut(s) | 240 |
| BstHHI | GCGC | 1 cut(s) | 258 |
| BstKTI | GATC | 1 cut(s) | 238 |
| BstMBI | GATC | 1 cut(s) | 235 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 105 |
| BstUI | CGCG | 1 cut(s) | 240 |
| BtuMI | TCGCGA | 1 cut(s) | 240 |
| Cac8I | GCNNGC | 1 cut(s) | 97 |
| CfoI | GCGC | 1 cut(s) | 258 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 2 cut(s) | 125, 246 |
| CviJI | RGCY | 2 cut(s) | 95, 158 |
| CviKI_1 | RGCY | 2 cut(s) | 95, 158 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 2 cut(s) | 68, 154 |
| DpnI | GATC | 1 cut(s) | 237 |
| DpnII | GATC | 1 cut(s) | 235 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 89 |
| EarI | CTCTTC | 2 cut(s) | 48, 89 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| Eco72I | CACGTG | 1 cut(s) | 132 |
| FaeI | CATG | 2 cut(s) | 128, 249 |
| FaiI | YATR | 4 cut(s) | 34, 90, 126, 247 |
| FatI | CATG | 2 cut(s) | 124, 245 |
| GlaI | GCGC | 1 cut(s) | 257 |
| HhaI | GCGC | 1 cut(s) | 258 |
| Hin1II | CATG | 2 cut(s) | 128, 249 |
| Hin6I | GCGC | 1 cut(s) | 256 |
| HinP1I | GCGC | 1 cut(s) | 256 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 239 |
| HpyCH4IV | ACGT | 1 cut(s) | 131 |
| HpyCH4V | TGCA | 1 cut(s) | 36 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 105 |
| HpyF3I | CTNAG | 2 cut(s) | 68, 154 |
| HpySE526I | ACGT | 1 cut(s) | 131 |
| Hsp92II | CATG | 2 cut(s) | 128, 249 |
| HspAI | GCGC | 1 cut(s) | 256 |
| Kzo9I | GATC | 1 cut(s) | 235 |
| LmnI | GCTCC | 1 cut(s) | 163 |
| LpnPI | CCDG | 4 cut(s) | 94, 99, 194, 236 |
| MaeII | ACGT | 1 cut(s) | 131 |
| MaeIII | GTNAC | 1 cut(s) | 127 |
| MalI | GATC | 1 cut(s) | 237 |
| MboI | GATC | 1 cut(s) | 235 |
| MboII | GAAGA | 2 cut(s) | 65, 76 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MluCI | AATT | 1 cut(s) | 39 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MseI | TTAA | 2 cut(s) | 120, 167 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MvnI | CGCG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 105 |
| NdeII | GATC | 1 cut(s) | 235 |
| NlaIII | CATG | 2 cut(s) | 128, 249 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| NruI | TCGCGA | 1 cut(s) | 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 1 cut(s) | 176 |
| PmaCI | CACGTG | 1 cut(s) | 132 |
| PmlI | CACGTG | 1 cut(s) | 132 |
| Ppu21I | YACGTR | 1 cut(s) | 132 |
| PspCI | CACGTG | 1 cut(s) | 132 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| RruI | TCGCGA | 1 cut(s) | 240 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 2 cut(s) | 120, 167 |
| Sau3AI | GATC | 1 cut(s) | 235 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 4 cut(s) | 97, 118, 134, 160 |
| SinI | GGWCC | 1 cut(s) | 103 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SsiI | CCGC | 1 cut(s) | 106 |
| TaiI | ACGT | 1 cut(s) | 134 |
| TasI | AATT | 1 cut(s) | 39 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TfiI | GAWTC | 1 cut(s) | 176 |
| Tru1I | TTAA | 2 cut(s) | 120, 167 |
| Tru9I | TTAA | 2 cut(s) | 120, 167 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |