Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

58230666 .. 58233444

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAAGAGGAGTCAACAAAGCATGTCCCATGGATGAGGTCCTTGAAAACAAGAATGAGGCGGCTAGAAATCTACAATATGCAAGCGGTAACTGACAATCTCGTTCTTCTTCGTCTTCTGCCTCTTCTACCAACAATGTGGAAGTTCATAGTTCAAATTGCTACCCAGTTGAGCTGGTTGTTCGACTACTTGCTATTCTGTTCGTTTGCCAAACCCTACTATGAGTTTGAATTGCCTGCAGAAGCTACTGAGACTCTTAGTAGCACAGTCCACTACGGAAGCTCCAACCCTGCTGTGATGTGCTCTGAAGGAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATTAGAGAACTGAAATGTGCTCATCTCTTTCATAAAACTTGCTTGGACCGTTGGACAAGTTTTAATCATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGTTCCCCCAATAAGTTCAGAATCCCAGTTACAAATTGAAGTGCTTCGTTTCAGGTTTTGCTCTTTTCGATTGGATAGACATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

21.91

Weight (kDa)

6.98

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	105 - 148	7.2e-13	Ring finger domain
zf-RING_11	PF17123	105 - 133	6.9e-09	RING-like zinc finger
zf-C3HC4	PF00097	106 - 147	7.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 86
AcuI	CTGAAG	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	46, 155, 230, 491
AluBI	AGCT	3 cut(s)	174, 245, 282
AluI	AGCT	3 cut(s)	174, 245, 282
Alw21I	GWGCWC	2 cut(s)	305, 376
Alw26I	GTCTC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	39, 400
AvaII	GGWCC	2 cut(s)	39, 400
BbrPI	CACGTG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	305, 376
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	65, 452
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	39, 400
BmgT120I	GGNCC	2 cut(s)	39, 400
BmrI	ACTGGG	2 cut(s)	160, 472
BmuI	ACTGGG	2 cut(s)	160, 472
BpiI	GAAGAC	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	166, 478
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	166, 478
BseRI	GAGGAG	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	305, 376
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	11, 417
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	11, 417
Bsp1286I	GDGCHC	2 cut(s)	305, 376
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	61, 86
BspCNI	CTCAG	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	166, 478
BssECI	CCNNGG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	268, 404
Bst6I	CTCTTC	2 cut(s)	129, 345
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	84, 237
BstDEI	CTNAG	2 cut(s)	249, 257
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	555
BstMAI	GTCTC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	84, 237
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	39, 400
CviAII	CATG	4 cut(s)	23, 30, 422, 543
CviJI	RGCY	4 cut(s)	64, 174, 245, 282
CviKI_1	RGCY	4 cut(s)	64, 174, 245, 282
DdeI	CTNAG	2 cut(s)	249, 257
Eam1104I	CTCTTC	2 cut(s)	129, 345
EarI	CTCTTC	2 cut(s)	129, 345
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	39, 400
Eco57I	CTGAAG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	4 cut(s)	26, 33, 425, 546
FaiI	YATR	9 cut(s)	24, 31, 80, 149, 222, 331, 387, 423, 544
FaqI	GGGAC	2 cut(s)	11, 417
FatI	CATG	4 cut(s)	22, 29, 421, 542
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	2 cut(s)	65, 452
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	1 cut(s)	62
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	26, 33, 425, 546
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	11, 253, 473
HpaII	CCGG	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	15, 271
Hpy188I	TCNGA	2 cut(s)	307, 472
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	2 cut(s)	15, 271
HpyAV	CCTTC	2 cut(s)	302, 338
HpyCH4III	ACNGT	2 cut(s)	268, 404
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	4, 82, 239, 333
HpyF3I	CTNAG	2 cut(s)	249, 257
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	4 cut(s)	26, 33, 425, 546
HspAI	GCGC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	160, 179, 249, 303, 455, 490, 491
MaeI	CTAG	2 cut(s)	65, 452
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	3 cut(s)	88, 424, 480
MboII	GAAGA	5 cut(s)	98, 101, 107, 116, 362
MhlI	GDGCHC	2 cut(s)	305, 376
MluCI	AATT	4 cut(s)	156, 230, 336, 486
MlyI	GAGTC	2 cut(s)	20, 247
MmeI	TCCRAC	2 cut(s)	309, 386
MnlI	CCTC	4 cut(s)	30, 51, 132, 334
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	29
NlaIII	CATG	4 cut(s)	26, 33, 425, 546
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	19, 247
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
PpsI	GAGTC	2 cut(s)	19, 247
Ppu21I	YACGTR	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	39, 400
PspPPI	RGGWCCY	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	62
Sau96I	GGNCC	2 cut(s)	39, 400
SchI	GAGTC	2 cut(s)	20, 247
SduI	GDGCHC	2 cut(s)	305, 376
SetI	ASST	6 cut(s)	41, 176, 247, 284, 431, 509
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	2 cut(s)	39, 400
Sse9I	AATT	4 cut(s)	156, 230, 336, 486
SsiI	CCGC	2 cut(s)	61, 86
SspMI	CTAG	2 cut(s)	65, 452
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	268, 404
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	2 cut(s)	183, 520
TasI	AATT	4 cut(s)	156, 230, 336, 486
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	136, 374
TspGWI	ACGGA	1 cut(s)	291
VpaK11BI	GGWCC	2 cut(s)	39, 400
XceI	RCATGY	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	65, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.