Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

59795953 .. 59796604

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACCTTCGCGTCTTCGTCAACTTTTTTCTTTAAATACCTATACCTTCGTATGTTCCTCGTCAAAGTCGTCCCAAGACCCAAGACCCAAGATCCATTCTTCAGTCTCGTTCTTCTTCGTCTTCTGCCTCTTCTACAAACAATGTGGAAGTTCATAGTTCAAATTGCTACTCAGTTGAGCTGGTTGTTCAACTATTTGCTATTCTGTTCGTTTGCCAAACCCTACTATGAGTTTGAATTGCCTGCAGAAGCTACTGAGACTCTTAGTAGCACAGTCCACTACGGAAGCTCCAACCCTGCTGTGATGTGCTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATTAGACAACTGAAATGTGCTCATCTCTTTCATAAAACTTGCTTGGAACGTTGGACAAGTTTTAATCATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAATAAGTTCAGAATCCCAGTTTCAAATTGAAGTGCTTCGTTTCAGGTTCTTCTCTTTTCGATCGGATAGACATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

187

Amino Acids

22.19

Weight (kDa)

8.38

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	103 - 150	8.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	107 - 150	1.4e-12	Ring finger domain
zf-RING_11	PF17123	107 - 135	5.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	108 - 149	6.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	11
AclI	AACGTT	1 cut(s)	409
AclWI	GGATC	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	85, 333
AcvI	CACGTG	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	447
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	161, 190, 236, 491, 497
AluBI	AGCT	4 cut(s)	180, 251, 288, 461
AluI	AGCT	4 cut(s)	180, 251, 288, 461
Alw21I	GWGCWC	2 cut(s)	311, 382
Alw26I	GTCTC	2 cut(s)	110, 251
AlwI	GGATC	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	561
BbrPI	CACGTG	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	6, 113
Bbv12I	GWGCWC	2 cut(s)	311, 382
BcoDI	GTCTC	2 cut(s)	110, 251
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	2 cut(s)	6, 113
BsaAI	YACGTR	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	537
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	185, 246
BseNI	ACTGG	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	311, 382
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	56, 423
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	2 cut(s)	110, 251
BsmFI	GGGAC	2 cut(s)	56, 423
Bsp1286I	GDGCHC	2 cut(s)	311, 382
Bsp143I	GATC	2 cut(s)	91, 527
BspCNI	CTCAG	2 cut(s)	184, 247
BspFNI	CGCG	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	91, 527
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	135, 351
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	171, 255, 263
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	2 cut(s)	94, 530
BstMAI	GTCTC	2 cut(s)	110, 251
BstMBI	GATC	2 cut(s)	91, 527
BstMCI	CGRYCG	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	11
BstV2I	GAAGAC	2 cut(s)	6, 113
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	561
CspCI	CAANNNNNGTGG	2 cut(s)	125, 160
CviAII	CATG	2 cut(s)	428, 549
CviJI	RGCY	4 cut(s)	180, 251, 288, 461
CviKI_1	RGCY	4 cut(s)	180, 251, 288, 461
DdeI	CTNAG	3 cut(s)	171, 255, 263
DpnI	GATC	2 cut(s)	93, 529
DpnII	GATC	2 cut(s)	91, 527
DraI	TTTAAA	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	135, 351
EarI	CTCTTC	2 cut(s)	135, 351
Eco57I	CTGAAG	2 cut(s)	85, 333
Eco72I	CACGTG	1 cut(s)	435
FaeI	CATG	2 cut(s)	431, 552
FaiI	YATR	8 cut(s)	43, 53, 155, 228, 337, 393, 429, 550
FaqI	GGGAC	2 cut(s)	56, 423
FatI	CATG	2 cut(s)	427, 548
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	560
HapII	CCGG	1 cut(s)	448
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	431, 552
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	259, 479
HpaII	CCGG	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	21, 277
Hpy188I	TCNGA	3 cut(s)	313, 478, 532
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	2 cut(s)	21, 277
HpyAV	CCTTC	3 cut(s)	16, 56, 344
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	409, 434
HpyCH4V	TGCA	2 cut(s)	245, 339
HpyF3I	CTNAG	3 cut(s)	171, 255, 263
HpySE526I	ACGT	2 cut(s)	409, 434
Hsp92II	CATG	2 cut(s)	431, 552
HspAI	GCGC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	91, 527
LmnI	GCTCC	2 cut(s)	293, 466
LpnPI	CCDG	6 cut(s)	166, 255, 309, 461, 496, 497
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	2 cut(s)	409, 434
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	93, 529
MboI	GATC	2 cut(s)	91, 527
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	311, 382
MluCI	AATT	4 cut(s)	162, 236, 342, 492
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	315, 392
MnlI	CCTC	3 cut(s)	68, 138, 340
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	33, 423
MspI	CCGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	11
NdeII	GATC	2 cut(s)	91, 527
NlaIII	CATG	2 cut(s)	431, 552
NmuCI	GTSAC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	479
Ple19I	CGATCG	1 cut(s)	530
PleI	GAGTC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	435
PmlI	CACGTG	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	435
Psp1406I	AACGTT	1 cut(s)	409
PspCI	CACGTG	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	33, 423
Sau3AI	GATC	2 cut(s)	91, 527
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	311, 382
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	162, 236, 342, 492
SspMI	CTAG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	412, 437
TaqI	TCGA	1 cut(s)	526
TasI	AATT	4 cut(s)	162, 236, 342, 492
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	33, 423
Tru9I	TTAA	2 cut(s)	33, 423
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	142, 380
TspGWI	ACGGA	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.