Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

56215030 .. 56218541

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTGGAAGTTCATAGTTCAAATTGCTACCCAGTTGAGCTGGTTATTCAACTACTTGCTTTTCTGTTCGTTTGCCAAACCCCACTATGAGTTTGAATTGCCTGCAAAAGCTATAGAGACTCTTAGTAGTACAGTCCACTACGAAAGCTCCGACCCTGCTGTGAGGTGCTCTGAAGAAGAATGTGCTGTGTGTCTATTCAAAATTGAGGAAGGAGAAGAGATGAGAGAACTGAGATGTGCTCATCTCTTTCATAAAACCTGCTTGGACCATTGGACAGGTCTCAAACATGTCACATGTCCCCTTTGCCGGAGTTTTCTAGCTCCCCCAGTGGAACTTGCTGTTGCTAGGGATGTATTTCTAGAGACCATCAATGGGGCTGACATAGAACACCAATTGGTTCTGGAAGATTTTGAGGAAGAAGACGATGAAGCTGGCGATGTAGTTGAAGGTGAAGGCGTAGGTCCAAAGGCGGCTAGAGGAGGTGAAGAGGAAGGGGAGAGTGAAAGATCACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

4.58

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	60 - 103	3.1e-11	Ring finger domain
zf-RING_11	PF17123	60 - 88	3.7e-09	RING-like zinc finger
zf-C3HC4	PF00097	61 - 102	2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	2 cut(s)	306, 372
AflIII	ACRYGT	2 cut(s)	286, 293
AgsI	TTSAA	5 cut(s)	20, 49, 95, 199, 446
AluBI	AGCT	5 cut(s)	39, 110, 147, 320, 431
AluI	AGCT	5 cut(s)	39, 110, 147, 320, 431
Alw21I	GWGCWC	2 cut(s)	170, 241
Alw26I	GTCTC	3 cut(s)	110, 284, 356
AspS9I	GGNCC	2 cut(s)	265, 461
AsuHPI	GGTGA	2 cut(s)	461, 494
AvaII	GGWCC	2 cut(s)	265, 461
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	170, 241
BccI	CCATC	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	110, 284, 356
BfaI	CTAG	5 cut(s)	317, 345, 359, 474, 517
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme18I	GGWCC	2 cut(s)	265, 461
BmgT120I	GGNCC	2 cut(s)	265, 461
BmrI	ACTGGG	2 cut(s)	25, 320
BmuI	ACTGGG	2 cut(s)	25, 320
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BsaI	GGTCTC	2 cut(s)	284, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 372
Bse1I	ACTGG	2 cut(s)	31, 326
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	306, 372
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	31, 326
BseRI	GAGGAG	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	170, 241
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	306, 372
BsmAI	GTCTC	3 cut(s)	110, 284, 356
BsmFI	GGGAC	1 cut(s)	282
Bso31I	GGTCTC	2 cut(s)	284, 356
Bsp1286I	GDGCHC	2 cut(s)	170, 241
Bsp143I	GATC	1 cut(s)	506
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	266
BspTNI	GGTCTC	2 cut(s)	284, 356
BsrI	ACTGG	2 cut(s)	31, 326
BssMI	GATC	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	2 cut(s)	210, 480
BstC8I	GCNNGC	2 cut(s)	102, 433
BstDEI	CTNAG	2 cut(s)	122, 230
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	3 cut(s)	110, 284, 356
BstMBI	GATC	1 cut(s)	506
BstNSI	RCATGY	2 cut(s)	290, 297
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	102, 433
Cfr13I	GGNCC	2 cut(s)	265, 461
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	2 cut(s)	287, 294
CviJI	RGCY	7 cut(s)	39, 110, 147, 320, 377, 431, 473
CviKI_1	RGCY	7 cut(s)	39, 110, 147, 320, 377, 431, 473
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	122, 230
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	210, 480
EarI	CTCTTC	2 cut(s)	210, 480
Eco31I	GGTCTC	2 cut(s)	284, 356
Eco47I	GGWCC	2 cut(s)	265, 461
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	2 cut(s)	290, 297
FaiI	YATR	7 cut(s)	14, 87, 113, 252, 288, 295, 383
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	286, 293
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	5 cut(s)	317, 345, 359, 474, 517
GluI	GCNGC	1 cut(s)	471
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	2 cut(s)	290, 297
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	461, 494
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	151, 172
Hpy188III	TCNNGA	2 cut(s)	359, 401
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	203, 440, 446, 485
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	122, 230
Hsp92II	CATG	2 cut(s)	290, 297
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	152, 325
MaeI	CTAG	5 cut(s)	317, 345, 359, 474, 517
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	7 cut(s)	185, 188, 227, 416, 428, 431, 497
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	2 cut(s)	170, 241
MluCI	AATT	4 cut(s)	21, 95, 201, 392
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	6 cut(s)	156, 199, 406, 470, 473, 481
MspI	CCGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	392
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	290, 297
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	290, 297
PciI	ACATGT	2 cut(s)	286, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	2 cut(s)	286, 293
PspPI	GGNCC	2 cut(s)	265, 461
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	2 cut(s)	265, 461
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	170, 241
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	265, 461
Sse9I	AATT	4 cut(s)	21, 95, 201, 392
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	5 cut(s)	317, 345, 359, 474, 517
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	4 cut(s)	21, 95, 201, 392
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	473
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	239, 441
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	265, 461
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	2 cut(s)	290, 297
XspI	CTAG	5 cut(s)	317, 345, 359, 474, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.