Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

51744162 .. 51744581

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG357500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCGGAAGTTTATAGTTCAAATTGCTACCCAGTTGAGCTGGTTGTTCAACTACTTGCTTTTCTATTCTTTTGCCAAACCCTACTATGAGTTTGGATTGCCCGCAGAAGCTATAGAGACTCTTATTAGCACAGTCCACTACGAAAGCTCCAACCCTGTTGTGAGTTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATGAGAGAACTGAGATGTGCTCATCTCTTTCATAAAGCTTGCTTGGACCGTTGGACAGATCTTAATCATGTCACGTGTCCCCTTTGCCGAAGTTCCCTAGCTCCCCCAATAAGTTCAGAATCCCAATCTCAAATTGAAGTGCTTCGTTTCAGGTTTTGCTCTTTCCAGTCGAATAGATATTGCGATATATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

139

Amino Acids

16.35

Weight (kDa)

5.55

Isoelectric Point (pI)

80.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	59 - 102	4e-12	Ring finger domain
zf-RING_11	PF17123	59 - 87	4.9e-09	RING-like zinc finger
zf-C3HC4	PF00097	60 - 101	1.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 102
AcuI	CTGAAG	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	20, 49, 353
AluBI	AGCT	5 cut(s)	39, 110, 147, 254, 317
AluI	AGCT	5 cut(s)	39, 110, 147, 254, 317
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BbrPI	CACGTG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BsaAI	YACGTR	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	2 cut(s)	31, 382
Bse8I	GATNNNNATC	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	31, 382
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	4, 102
BspCNI	CTCAG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	31, 382
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	133, 266
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	102, 256
BstDEI	CTNAG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	102, 256
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	5 cut(s)	39, 110, 147, 254, 317
CviKI_1	RGCY	5 cut(s)	39, 110, 147, 254, 317
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	189
Eco72I	CACGTG	1 cut(s)	291
FaeI	CATG	1 cut(s)	287
FaiI	YATR	8 cut(s)	14, 87, 113, 193, 249, 285, 404, 406
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	283
FauI	CCCGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	118, 335
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	169, 334
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	133, 266
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	152, 322
LpnPI	CCDG	5 cut(s)	25, 44, 168, 352, 395
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	182, 185, 224
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	3 cut(s)	21, 198, 348
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	174, 248
MnlI	CCTC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	279
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	291
PmlI	CACGTG	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	41, 112, 149, 256, 293, 319, 371
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	21, 198, 348
SsiI	CCGC	2 cut(s)	4, 102
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	133, 266
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	386
TasI	AATT	3 cut(s)	21, 198, 348
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.