Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

3653482 .. 3653934

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTACAAGTACATACATCTAGCTTTCACCCACCTCAGCTGGCTACTCAACTTCGTGGTCTACCATTCCTTCTCTAAACATTATGATCACTATTTTGACGAATTATTGCCTGCAGACCAAGCCACAGAAATATCACTTACCACAGTCCAGTACAAACCCAATCCCGGGCCGAATTCGGAGACTAGTACTGCGGAATGCGCTGTGTGTCTCTGCAAAATTGAGGAAGGAGAAGAGATTAGAGAACTGAGGTGTGCTCATCTCTTTCATAAACCATGCTTGGACAAATGGACTGGATTTAAGCATGCCACTTGTCCGATTTGCCGCAGTCGTCTAGCTCCACCAAGAAGCAAACAACTCCATCAGCAGTTTGATGAACAAGTGGAAGTGCTGCTGTTTAAGTTTTGTTCTTTCAGCTCGGACAGTGATCGTGGCGATAGATGGTGGCTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

151

Amino Acids

17.66

Weight (kDa)

6.49

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	65 - 108	4e-12	Ring finger domain
zf-RING_11	PF17123	65 - 93	7e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	2 cut(s)	191, 322
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	4 cut(s)	5, 11, 152, 187
AfiI	CCNNNNNNNGG	2 cut(s)	164, 165
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	4 cut(s)	23, 39, 335, 414
AluI	AGCT	4 cut(s)	23, 39, 335, 414
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	173, 212
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	388, 445
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	2 cut(s)	165, 166
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	375, 432
BccI	CCATC	2 cut(s)	366, 432
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	165, 166
BcoDI	GTCTC	2 cut(s)	173, 212
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	3 cut(s)	20, 183, 332
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	3 cut(s)	322, 389, 446
BlsI	GCNGC	3 cut(s)	323, 390, 447
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	165, 166
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	2 cut(s)	165, 166
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	165, 166
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 165
Bse1I	ACTGG	2 cut(s)	148, 295
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	164, 165
BseMII	CTCAG	2 cut(s)	49, 236
BseNI	ACTGG	2 cut(s)	148, 295
BseXI	GCAGC	2 cut(s)	375, 432
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	164, 165
BsmAI	GTCTC	2 cut(s)	173, 212
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	85, 424
BspACI	CCGC	2 cut(s)	191, 322
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	48, 237
BspMAI	CTGCAG	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	148, 295
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	85, 424
Bst4CI	ACNGT	2 cut(s)	145, 422
Bst6I	CTCTTC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	41, 111, 303
BstDEI	CTNAG	2 cut(s)	35, 245
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	88, 427
BstMAI	GTCTC	2 cut(s)	173, 212
BstMBI	GATC	2 cut(s)	85, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 197
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	163, 164
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	375, 432
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	41, 111, 303
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	167
Cfr9I	CCCGGG	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	4, 10, 151, 186
CviAII	CATG	2 cut(s)	273, 302
CviJI	RGCY	8 cut(s)	23, 39, 43, 122, 169, 335, 414, 445
CviKI_1	RGCY	8 cut(s)	23, 39, 43, 122, 169, 335, 414, 445
CviQI	GTAC	4 cut(s)	4, 10, 151, 186
DdeI	CTNAG	2 cut(s)	35, 245
DpnI	GATC	2 cut(s)	87, 426
DpnII	GATC	2 cut(s)	85, 424
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	276, 305
FaiI	YATR	5 cut(s)	14, 84, 267, 274, 303
FatI	CATG	2 cut(s)	272, 301
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	322, 389, 446
Fsp4HI	GCNGC	3 cut(s)	322, 389, 446
FspBI	CTAG	3 cut(s)	20, 183, 332
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	322, 389, 446
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	276, 305
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	178, 315, 418
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	79, 218
HpyCH4III	ACNGT	2 cut(s)	145, 422
HpyCH4V	TGCA	2 cut(s)	113, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 197
HpyF3I	CTNAG	2 cut(s)	35, 245
Hsp92II	CATG	2 cut(s)	276, 305
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 424
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	25, 123, 161, 178, 276
Lsp1109I	GCAGC	2 cut(s)	375, 432
MaeI	CTAG	3 cut(s)	20, 183, 332
MalI	GATC	2 cut(s)	87, 426
MboI	GATC	2 cut(s)	85, 424
MboII	GAAGA	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	3 cut(s)	101, 172, 216
MnlI	CCTC	3 cut(s)	44, 214, 240
MseI	TTAA	2 cut(s)	297, 396
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	165, 166
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	119, 197
NciI	CCSGG	2 cut(s)	165, 166
NdeII	GATC	2 cut(s)	85, 424
NlaIII	CATG	2 cut(s)	276, 305
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PctI	GAATGC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	323, 390, 447
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	39
RsaI	GTAC	4 cut(s)	5, 11, 152, 187
RsaNI	GTAC	4 cut(s)	4, 10, 151, 186
SaqAI	TTAA	2 cut(s)	297, 396
SatI	GCNGC	3 cut(s)	322, 389, 446
Sau3AI	GATC	2 cut(s)	85, 424
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	165, 166
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	25, 36, 41, 251, 337, 416
SfcI	CTRYAG	1 cut(s)	111
SmaI	CCCGGG	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	182
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	101, 172, 216
SsiI	CCGC	2 cut(s)	191, 322
SspMI	CTAG	3 cut(s)	20, 183, 332
StyD4I	CCNGG	2 cut(s)	163, 164
TaaI	ACNGT	2 cut(s)	145, 422
TasI	AATT	3 cut(s)	101, 172, 216
TatI	WGTACW	4 cut(s)	3, 9, 150, 185
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	297, 396
Tru9I	TTAA	2 cut(s)	297, 396
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	2 cut(s)	388, 445
TspDTI	ATGAA	2 cut(s)	254, 387
TspMI	CCCGGG	1 cut(s)	164
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	305
XmaI	CCCGGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	3 cut(s)	20, 183, 332
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.