Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

57228799 .. 57229311

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTCCTCGTCAAAGTCGTCCCAAGACCCAAGACCCAAGATCCATTCTTCAGTCTCGTTCTTCTTCGTCTTCTGCCTCTTCTACAAACAATGTGGAAGTTCATAGTTCAAATTGCTACTCAGTTGAGCTGGTTGTTCAACTATTTGCTATTCTGTTCGTTTGCCAAACCCTACTATGAGTTTGAATTGCCTGCAGAAGCTACTGAGACTCTTAGTAGCACAGTCCACTACGGAAGCTCCAACCCTGCTGTGATGTGCTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAAATTAGAGAACTGAAATGTGCTCATCTCTTTCATAAAACTTGCTTGGACCGTTGGACAAGTTTTAATCATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAATAAGTTCAGAATCCCAGTTTCAAATTGAAGTGCTTCGTTTCAGGTTCTTCTCTTTTCGATCGGATAGACATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

20.09

Weight (kDa)

6.94

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	90 - 133	1e-12	Ring finger domain
zf-RING_11	PF17123	90 - 118	6e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	34, 282
AcvI	CACGTG	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	110, 139, 185, 440, 446
AluBI	AGCT	4 cut(s)	129, 200, 237, 410
AluI	AGCT	4 cut(s)	129, 200, 237, 410
Alw21I	GWGCWC	2 cut(s)	260, 331
Alw26I	GTCTC	2 cut(s)	59, 200
AlwI	GGATC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	260, 331
BcoDI	GTCTC	2 cut(s)	59, 200
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	486
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	134, 195
BseNI	ACTGG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	260, 331
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	5, 372
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	59, 200
BsmFI	GGGAC	2 cut(s)	5, 372
Bsp1286I	GDGCHC	2 cut(s)	260, 331
Bsp143I	GATC	2 cut(s)	40, 476
BspCNI	CTCAG	2 cut(s)	133, 196
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	2 cut(s)	40, 476
Bst4CI	ACNGT	2 cut(s)	223, 359
Bst6I	CTCTTC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	120, 204, 212
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	43, 479
BstMAI	GTCTC	2 cut(s)	59, 200
BstMBI	GATC	2 cut(s)	40, 476
BstMCI	CGRYCG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	2 cut(s)	377, 498
CviJI	RGCY	4 cut(s)	129, 200, 237, 410
CviKI_1	RGCY	4 cut(s)	129, 200, 237, 410
DdeI	CTNAG	3 cut(s)	120, 204, 212
DpnI	GATC	2 cut(s)	42, 478
DpnII	GATC	2 cut(s)	40, 476
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	34, 282
Eco72I	CACGTG	1 cut(s)	384
FaeI	CATG	2 cut(s)	380, 501
FaiI	YATR	6 cut(s)	104, 177, 286, 342, 378, 499
FaqI	GGGAC	2 cut(s)	5, 372
FatI	CATG	2 cut(s)	376, 497
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	509
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	2 cut(s)	380, 501
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	208, 428
HpaII	CCGG	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	262, 427, 481
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	223, 359
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	194, 288
HpyF3I	CTNAG	3 cut(s)	120, 204, 212
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	380, 501
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	40, 476
LmnI	GCTCC	2 cut(s)	242, 415
LpnPI	CCDG	6 cut(s)	115, 204, 258, 410, 445, 446
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	42, 478
MboI	GATC	2 cut(s)	40, 476
MboII	GAAGA	9 cut(s)	40, 53, 56, 62, 71, 275, 278, 317, 457
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	260, 331
MluCI	AATT	5 cut(s)	111, 185, 291, 309, 441
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	2 cut(s)	264, 341
MnlI	CCTC	3 cut(s)	17, 87, 289
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	372
MspI	CCGG	1 cut(s)	397
NdeII	GATC	2 cut(s)	40, 476
NlaIII	CATG	2 cut(s)	380, 501
NmuCI	GTSAC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	428
Ple19I	CGATCG	1 cut(s)	479
PleI	GAGTC	1 cut(s)	202
PmaCI	CACGTG	1 cut(s)	384
PmlI	CACGTG	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	40, 476
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	260, 331
SetI	ASST	6 cut(s)	131, 202, 239, 386, 412, 464
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	5 cut(s)	111, 185, 291, 309, 441
SspMI	CTAG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	223, 359
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	475
TasI	AATT	5 cut(s)	111, 185, 291, 309, 441
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	91, 329
TspGWI	ACGGA	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.