Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Reverse (-)

33663586 .. 33664008

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTGGAAGTTCATAGTTCAAATTGCTACCCAGTTGAGCTGGTTGTTCAACTACTTGCTTTGCTGTTCTTTTGCCGAACACTACTATGACTTTGAATGGCCTGCAGAAGTTACAGAGACTCTTAGTAGCAAAATCCACTACGAAAGCTCCAACCCTGCTGTGATGTACTCTGAAGAAAAATGTGTTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATGAGAGAACTGAGATTTGCTCATCTCTTCCATAAAGCTTGCTTGGACCGCTGGACAAGTCTTAATCATGTCATGTGTCCCTTTTGCCGGAGTTCCTTAGCTCCCCTATTAAGTTCAGAATCCCAGTTTCAAATTGAAGTGCTTCGTTTCAAGTTTTGCTTTTTCCGGTCGGATAGAGATTGCAATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

141

Amino Acids

16.84

Weight (kDa)

5.71

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	60 - 103	5.1e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	20, 49, 95, 350, 356, 370
AluBI	AGCT	4 cut(s)	39, 147, 257, 320
AluI	AGCT	4 cut(s)	39, 147, 257, 320
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmrI	ACTGGG	2 cut(s)	25, 337
BmuI	ACTGGG	2 cut(s)	25, 337
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	31, 343
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	31, 343
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	307, 385
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	31, 343
Bst6I	CTCTTC	2 cut(s)	210, 251
BstC8I	GCNNGC	2 cut(s)	102, 259
BstDEI	CTNAG	3 cut(s)	122, 230, 316
BstHHI	GCGC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	110
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	102, 259
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	287, 292, 408
CviJI	RGCY	5 cut(s)	39, 100, 147, 257, 320
CviKI_1	RGCY	5 cut(s)	39, 100, 147, 257, 320
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	122, 230, 316
Eam1104I	CTCTTC	2 cut(s)	210, 251
EarI	CTCTTC	2 cut(s)	210, 251
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	3 cut(s)	290, 295, 411
FaiI	YATR	7 cut(s)	14, 87, 196, 252, 288, 293, 409
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	3 cut(s)	286, 291, 407
GlaI	GCGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	2 cut(s)	307, 385
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	290, 295, 411
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	118, 338
HpaII	CCGG	2 cut(s)	307, 385
Hpy188I	TCNGA	3 cut(s)	172, 337, 391
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	104, 198, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	3 cut(s)	122, 230, 316
Hsp92II	CATG	3 cut(s)	290, 295, 411
HspAI	GCGC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	152, 325
LpnPI	CCDG	8 cut(s)	25, 44, 114, 168, 256, 320, 356, 398
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	185, 227, 238
MluCI	AATT	3 cut(s)	21, 201, 351
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	174, 369
MnlI	CCTC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	2 cut(s)	282, 329
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	2 cut(s)	307, 385
MwoI	GCNNNNNNNGC	1 cut(s)	267
NlaIII	CATG	3 cut(s)	290, 295, 411
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	282, 329
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	112
SetI	ASST	4 cut(s)	41, 149, 259, 322
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	21, 201, 351
SsiI	CCGC	1 cut(s)	268
TasI	AATT	3 cut(s)	21, 201, 351
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	282, 329
Tru9I	TTAA	2 cut(s)	282, 329
VpaK11BI	GGWCC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.