Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

57297728 .. 57298763

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTGGAAGTTCATAGTTCAAATTGCTACTCAGTTGAGCTGGTTGTTCAACTACTTGCTATTCTGTTCGTTTGCCAAACCCTACTCTGAGTTTGAATTGCCTGCAGAAGCTACTGAGAGTCTTAGTAGCACAGTCCACTACGGAAGCTCCAACCCTGCTGTGATGTGCTCTGAAGAAGAATGTGTTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATTAGAGAACTGAAATGTGCTCATCTCTTTCATAAAACTTGCTTGGACCGTTGGACAAGTTTTAATCATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAATAAGTTCAGAATCTCAGTTTCAAATTGAAGTGCTTCGTTTCAGGTTCTTCTCTTTTCGATCGGATAGACATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

140

Amino Acids

16.53

Weight (kDa)

5.94

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	58 - 103	6.8e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	60 - 103	5.6e-13	Ring finger domain
zf-RING_11	PF17123	60 - 88	1.2e-08	RING-like zinc finger
zf-C3HC4	PF00097	61 - 102	4.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	20, 49, 95, 350, 356
AluBI	AGCT	4 cut(s)	39, 110, 147, 320
AluI	AGCT	4 cut(s)	39, 110, 147, 320
Alw21I	GWGCWC	2 cut(s)	170, 241
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	170, 241
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	4 cut(s)	44, 78, 105, 356
Bsh1285I	CGRYCG	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	2 cut(s)	170, 241
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	170, 241
Bsp143I	GATC	1 cut(s)	386
BspCNI	CTCAG	4 cut(s)	43, 79, 106, 355
BspMAI	CTGCAG	1 cut(s)	106
BssMI	GATC	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	133, 269
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	5 cut(s)	30, 87, 114, 122, 342
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	386
BstMCI	CGRYCG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	2 cut(s)	287, 408
CviJI	RGCY	4 cut(s)	39, 110, 147, 320
CviKI_1	RGCY	4 cut(s)	39, 110, 147, 320
DdeI	CTNAG	5 cut(s)	30, 87, 114, 122, 342
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	294
FaeI	CATG	2 cut(s)	290, 411
FaiI	YATR	5 cut(s)	14, 196, 252, 288, 409
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	286, 407
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	419
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	290, 411
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	118, 338
HpaII	CCGG	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	88, 172, 337, 391
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	133, 269
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	104, 198
HpyF3I	CTNAG	5 cut(s)	30, 87, 114, 122, 342
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	290, 411
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	2 cut(s)	152, 325
LpnPI	CCDG	5 cut(s)	25, 114, 168, 320, 355
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	4 cut(s)	185, 188, 227, 367
MhlI	GDGCHC	2 cut(s)	170, 241
MluCI	AATT	4 cut(s)	21, 95, 201, 351
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	174, 251
MnlI	CCTC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	282
MspI	CCGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	2 cut(s)	290, 411
NmuCI	GTSAC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	338
Ple19I	CGATCG	1 cut(s)	389
PleI	GAGTC	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	294
PspCI	CACGTG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	170, 241
SetI	ASST	6 cut(s)	41, 112, 149, 296, 322, 374
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	21, 95, 201, 351
SspMI	CTAG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	133, 269
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	21, 95, 201, 351
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.