Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003130.1

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

12894 .. 13406

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003130.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttcctcgtcaaagtcgtcccaagacccaagacccaagatccattcttcagtctcgttcttcttcgtcttctgcctcttctacaaacaatgtggaagttcatagttcaaattgctactcagttgagctggttgttcaactatttgctattctgttcgtttgccaaaccctactatgagtttgaattgcctgcagaagctactgagactcttagtagcacagtccactacggaagctccaaccctgctgtgatgtgctctgaagaagaatgtgctgtgtgtctatgcaaaattgaggaaggagaagagattagagaactgaaatgtgctcatctctttcataaaacttgcttggaccgttggacaagttttaatcatgtcacgtgtcccctttgccggagtttcctagctcccccaataagttcagaatcccagtttcaaattgaagtgcttcgtttcaggttcttctcttttcgatcggatagacatggtgatacatggtggttgcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

19.99

Weight (kDa)

6.51

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	34, 282
AcvI	CACGTG	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	110, 139, 185, 440, 446
AluBI	AGCT	4 cut(s)	129, 200, 237, 410
AluI	AGCT	4 cut(s)	129, 200, 237, 410
Alw21I	GWGCWC	2 cut(s)	260, 331
Alw26I	GTCTC	2 cut(s)	59, 200
AlwI	GGATC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	260, 331
BcoDI	GTCTC	2 cut(s)	59, 200
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	134, 195
BseNI	ACTGG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	260, 331
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	5, 372
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	59, 200
BsmFI	GGGAC	2 cut(s)	5, 372
Bsp1286I	GDGCHC	2 cut(s)	260, 331
Bsp143I	GATC	2 cut(s)	40, 476
BspCNI	CTCAG	2 cut(s)	133, 196
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	2 cut(s)	40, 476
Bst4CI	ACNGT	2 cut(s)	223, 359
Bst6I	CTCTTC	2 cut(s)	84, 300
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	120, 204, 212
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	43, 479
BstMAI	GTCTC	2 cut(s)	59, 200
BstMBI	GATC	2 cut(s)	40, 476
BstMCI	CGRYCG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	3 cut(s)	377, 488, 498
CviJI	RGCY	4 cut(s)	129, 200, 237, 410
CviKI_1	RGCY	4 cut(s)	129, 200, 237, 410
DdeI	CTNAG	3 cut(s)	120, 204, 212
DpnI	GATC	2 cut(s)	42, 478
DpnII	GATC	2 cut(s)	40, 476
Eam1104I	CTCTTC	2 cut(s)	84, 300
EarI	CTCTTC	2 cut(s)	84, 300
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	34, 282
Eco72I	CACGTG	1 cut(s)	384
FaeI	CATG	3 cut(s)	380, 491, 501
FaiI	YATR	7 cut(s)	104, 177, 286, 342, 378, 489, 499
FaqI	GGGAC	2 cut(s)	5, 372
FatI	CATG	3 cut(s)	376, 487, 497
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	509
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	3 cut(s)	380, 491, 501
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	208, 428
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	262, 427, 481
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	223, 359
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	194, 288
HpyF3I	CTNAG	3 cut(s)	120, 204, 212
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	3 cut(s)	380, 491, 501
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	40, 476
LmnI	GCTCC	2 cut(s)	242, 415
LpnPI	CCDG	6 cut(s)	115, 204, 258, 410, 445, 446
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	42, 478
MboI	GATC	2 cut(s)	40, 476
MboII	GAAGA	9 cut(s)	40, 53, 56, 62, 71, 275, 278, 317, 457
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	260, 331
MluCI	AATT	4 cut(s)	111, 185, 291, 441
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	2 cut(s)	264, 341
MnlI	CCTC	3 cut(s)	17, 87, 289
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	372
MspI	CCGG	1 cut(s)	397
NdeII	GATC	2 cut(s)	40, 476
NlaIII	CATG	3 cut(s)	380, 491, 501
NmuCI	GTSAC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	428
Ple19I	CGATCG	1 cut(s)	479
PleI	GAGTC	1 cut(s)	202
PmaCI	CACGTG	1 cut(s)	384
PmlI	CACGTG	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	40, 476
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	260, 331
SetI	ASST	6 cut(s)	131, 202, 239, 386, 412, 464
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	111, 185, 291, 441
SspMI	CTAG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	223, 359
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	475
TasI	AATT	4 cut(s)	111, 185, 291, 441
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	91, 329
TspGWI	ACGGA	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.