Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Reverse (-)

29603878 .. 29605363

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G301000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTGGGTTGGAAAATGGATGTGGCTGCTGGGTGGGTGGGAAAACGAAATTAGTGGCTGGGGTGGGAGGTGGACGTGGCTGCGCAGAGCAAACCATAGAGCCATCGTCGCTCAGCACAGTTCACTACAAACCCGAGCCTTCTGGGACCAGCGACGAGATTCCTGCGGAGTGTGCTGTGTGTCTATGCAAGATTGAGGAAGGAGATGAAGTTAGAGAACTGAGATGTGCTCATCTCTTTCATAAACAATGCTTGGACCGGTGGACTGGGTTTCAGCATGCCACGTGTCCCCTTTGCCGCAGTTTTCTAGCTCCCCCGAGAAGCACCCTAGTGTCCCATTCCCAGCAGTTTGTTCAATCGGAAGTGCTGCTATTCAAGTTTTGTTCTTTCAGTTCGGATAGTGATGATGGAGGTGGATGGTGGCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.54

Weight (kDa)

5.69

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AciI	CCGC	3 cut(s)	167, 298, 427
AcvI	CACGTG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	356, 376
AjiI	CACGTC	1 cut(s)	77
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	134, 316
ApeKI	GCWGC	4 cut(s)	27, 81, 367, 424
AsiGI	ACCGGT	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	147, 256
AvaI	CYCGRG	2 cut(s)	134, 316
AvaII	GGWCC	2 cut(s)	147, 256
BbrPI	CACGTG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	14, 68, 354, 411
BccI	CCATC	3 cut(s)	112, 401, 411
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BfaI	CTAG	2 cut(s)	308, 329
BisI	GCNGC	5 cut(s)	28, 82, 298, 368, 425
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	5 cut(s)	29, 83, 299, 369, 426
Bme18I	GGWCC	2 cut(s)	147, 256
BmeT110I	CYCGRG	2 cut(s)	134, 316
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	147, 256
BmiI	GGNNCC	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
Bpu1102I	GCTNAGC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	26, 422
BseMII	CTCAG	2 cut(s)	127, 212
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	4 cut(s)	14, 68, 354, 411
BseYI	CCCAGC	3 cut(s)	30, 59, 342
BshTI	ACCGGT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	2 cut(s)	134, 316
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	3 cut(s)	160, 273, 319
BsmFI	GGGAC	3 cut(s)	160, 273, 319
BsoBI	CYCGRG	2 cut(s)	134, 316
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	3 cut(s)	167, 298, 427
BspCNI	CTCAG	2 cut(s)	126, 213
BspLI	GGNNCC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	113, 221
BstF5I	GGATG	2 cut(s)	26, 422
BstHHI	GCGC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 173
BstNSI	RCATGY	1 cut(s)	281
BstV1I	GCAGC	4 cut(s)	14, 68, 354, 411
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	26, 422
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	147, 256
CspAI	ACCGGT	1 cut(s)	258
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	7 cut(s)	27, 59, 81, 103, 139, 311, 424
CviKI_1	RGCY	7 cut(s)	27, 59, 81, 103, 139, 311, 424
DdeI	CTNAG	2 cut(s)	113, 221
Eco47I	GGWCC	2 cut(s)	147, 256
Eco72I	CACGTG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	134, 316
FaeI	CATG	1 cut(s)	281
FaiI	YATR	4 cut(s)	98, 187, 243, 279
FaqI	GGGAC	3 cut(s)	160, 273, 319
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	28, 82, 298, 368, 425
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	5 cut(s)	28, 82, 298, 368, 425
FspBI	CTAG	2 cut(s)	308, 329
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	5 cut(s)	28, 82, 298, 368, 425
GsaI	CCCAGC	3 cut(s)	34, 63, 346
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	74, 124, 264
Hpy188I	TCNGA	2 cut(s)	361, 397
Hpy8I	GTNNAC	3 cut(s)	74, 124, 264
Hpy99I	CGWCG	2 cut(s)	112, 158
HpyAV	CCTTC	2 cut(s)	150, 194
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	76, 284
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 173
HpyF3I	CTNAG	2 cut(s)	113, 221
HpySE526I	ACGT	2 cut(s)	76, 284
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	16, 45, 129, 163, 177, 252, 272, 356
Lsp1109I	GCAGC	4 cut(s)	14, 68, 354, 411
MaeI	CTAG	2 cut(s)	308, 329
MaeII	ACGT	2 cut(s)	76, 284
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	3 cut(s)	62, 190, 404
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	109, 173
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	85
NspI	RCATGY	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	5 cut(s)	29, 83, 299, 369, 426
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	285
PspFI	CCCAGC	3 cut(s)	30, 59, 342
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	147, 256
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	5 cut(s)	28, 82, 298, 368, 425
Sau96I	GGNCC	2 cut(s)	147, 256
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	5 cut(s)	73, 79, 287, 313, 415
SinI	GGWCC	2 cut(s)	147, 256
SmiMI	CAYNNNNRTG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	3 cut(s)	167, 298, 427
SspMI	CTAG	2 cut(s)	308, 329
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	79, 287
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	27, 81, 367, 424
TspDTI	ATGAA	2 cut(s)	222, 230
VpaK11BI	GGWCC	2 cut(s)	147, 256
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	2 cut(s)	308, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.