Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

3066552 .. 3067061

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGGAAATTTAAATCCCTCAACTCTGTCAATTCTCCTTCTACAATTATTCGGACCATGTACAAGTACATACATCTAGCTTTCACCCACCTCAGCTGGCTGCTCAACTTCGTGGTTTACCATTCCTTCTCCAAACATTATGATCACTATTTTGACGAATTATTGCCTGCAGACCAAGCCACAGAAATATCACTTACCACAGTCCAGTACAAACCCAATCCCGGGGCGAATTCGGAGACTAATACTGCGGAATGCGCTGTGTGTCTCTGCAAAATTGAGGAAGGAGAAGAGATTAGAGAATTGAGGTGTGCTCATCTATTTCATAAACCATGCTTGGACAAATGGACTGGATTTAAGCATGCCACTTGTCCGATTTGCCGTAGTCGTCTAGCTCCACCAAGAAGCAAACAACTCCATCAGCAGTTTGATGAACAAGTGGAAGTGCTGCTGTTTACGTTCTGTTCTTTCAGCTCGGACAGTGATCGTGGCGATAGATGGTGGCTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

19.82

Weight (kDa)

7.1

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	84 - 127	5e-12	Ring finger domain
zf-RING_11	PF17123	84 - 112	8.5e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	8, 229
AfaI	GTAC	3 cut(s)	62, 68, 209
AfiI	CCNNNNNNNGG	2 cut(s)	221, 222
AluBI	AGCT	4 cut(s)	80, 96, 392, 471
AluI	AGCT	4 cut(s)	80, 96, 392, 471
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	230, 269
Ama87I	CYCGRG	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	100, 445, 502
ApoI	RAATTY	2 cut(s)	8, 229
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	2 cut(s)	222, 223
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	87, 432, 489
BccI	CCATC	2 cut(s)	423, 489
BceAI	ACGGC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	222, 223
BcoDI	GTCTC	2 cut(s)	230, 269
BfaI	CTAG	2 cut(s)	77, 389
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	3 cut(s)	101, 446, 503
BlsI	GCNGC	3 cut(s)	102, 447, 504
Bme1390I	CCNGG	2 cut(s)	222, 223
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	222, 223
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
Bpu10I	CCTNAGC	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	222, 223
BsaJI	CCNNGG	2 cut(s)	221, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 222
Bse1I	ACTGG	2 cut(s)	205, 352
BseDI	CCNNGG	2 cut(s)	221, 222
BseLI	CCNNNNNNNGG	2 cut(s)	221, 222
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	205, 352
BseXI	GCAGC	3 cut(s)	87, 432, 489
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	221, 222
BsmAI	GTCTC	2 cut(s)	230, 269
BsmI	GAATGC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	142, 481
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	205, 352
BssECI	CCNNGG	2 cut(s)	221, 222
BssMI	GATC	2 cut(s)	142, 481
Bst4CI	ACNGT	2 cut(s)	202, 479
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	98, 168, 360
BstDEI	CTNAG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	145, 484
BstMAI	GTCTC	2 cut(s)	230, 269
BstMBI	GATC	2 cut(s)	142, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 254
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	220, 221
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	87, 432, 489
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	98, 168, 360
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	54
Cfr9I	CCCGGG	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	61, 67, 208
CviAII	CATG	3 cut(s)	58, 330, 359
CviJI	RGCY	7 cut(s)	80, 96, 100, 179, 392, 471, 502
CviKI_1	RGCY	7 cut(s)	80, 96, 100, 179, 392, 471, 502
CviQI	GTAC	3 cut(s)	61, 67, 208
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	2 cut(s)	144, 483
DpnII	GATC	2 cut(s)	142, 481
DraI	TTTAAA	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	229
FaeI	CATG	3 cut(s)	61, 333, 362
FaiI	YATR	6 cut(s)	59, 71, 141, 324, 331, 360
FatI	CATG	3 cut(s)	57, 329, 358
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	101, 446, 503
Fsp4HI	GCNGC	3 cut(s)	101, 446, 503
FspBI	CTAG	2 cut(s)	77, 389
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	101, 446, 503
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	61, 333, 362
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	118, 453
Hpy188I	TCNGA	4 cut(s)	54, 235, 372, 475
Hpy8I	GTNNAC	2 cut(s)	118, 453
HpyAV	CCTTC	3 cut(s)	48, 136, 275
HpyCH4III	ACNGT	2 cut(s)	202, 479
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	170, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 254
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	61, 333, 362
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 481
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	5 cut(s)	82, 180, 218, 235, 333
Lsp1109I	GCAGC	3 cut(s)	87, 432, 489
MaeI	CTAG	2 cut(s)	77, 389
MaeII	ACGT	1 cut(s)	455
MalI	GATC	2 cut(s)	144, 483
MboI	GATC	2 cut(s)	142, 481
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	7 cut(s)	8, 31, 45, 158, 229, 273, 299
MnlI	CCTC	4 cut(s)	29, 101, 271, 297
MseI	TTAA	2 cut(s)	12, 354
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	222, 223
Mva1269I	GAATGC	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	176, 254
NciI	CCSGG	2 cut(s)	222, 223
NdeII	GATC	2 cut(s)	142, 481
NlaIII	CATG	3 cut(s)	61, 333, 362
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	102, 447, 504
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	3 cut(s)	62, 68, 209
RsaNI	GTAC	3 cut(s)	61, 67, 208
SaqAI	TTAA	2 cut(s)	12, 354
SatI	GCNGC	3 cut(s)	101, 446, 503
Sau3AI	GATC	2 cut(s)	142, 481
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	222, 223
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	7 cut(s)	82, 93, 98, 308, 394, 458, 473
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	54
SmaI	CCCGGG	1 cut(s)	223
SmiI	ATTTAAAT	1 cut(s)	13
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	7 cut(s)	8, 31, 45, 158, 229, 273, 299
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	2 cut(s)	77, 389
StyD4I	CCNGG	2 cut(s)	220, 221
SwaI	ATTTAAAT	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	202, 479
TaiI	ACGT	1 cut(s)	458
TasI	AATT	7 cut(s)	8, 31, 45, 158, 229, 273, 299
TatI	WGTACW	3 cut(s)	60, 66, 207
Tru1I	TTAA	2 cut(s)	12, 354
Tru9I	TTAA	2 cut(s)	12, 354
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	3 cut(s)	100, 445, 502
TspDTI	ATGAA	2 cut(s)	311, 444
TspMI	CCCGGG	1 cut(s)	221
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	2 cut(s)	8, 229
XceI	RCATGY	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	221
XspI	CTAG	2 cut(s)	77, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.