Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

29750600 .. 29751044

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G303200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTTGTAATTTGCAGCCACTTAAGCTCGTTGTTCAACATCTTGCTTTACCATTCCTTCTCTGAACATTCTCATGATCACTGCTATTGCTTCCCTTCAGAGCAAACCATAGAGCAATCACTTGGCACAATTGAGGAAGGAGATGAGGTTAGAGAACTGAGATGTGTTCATCTCTTTCATAGACAATGCTTGGACCGGTGGACCGGGTTTCAGCATGCCACGTGTCCCCTTTGCCACAGTTTTCTAGCTCCCCATAGAAGCACCCTAGTATCCCATTCCCAGCAGTTTCTTCAATCGGAAGTGCTGCTATTTAAGTTTTGTTCTTTTAGTTTGGATAGTGATGATGGCGATGGATGGTGGCTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

5.66

Isoelectric Point (pI)

68.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	81
AcvI	CACGTG	1 cut(s)	222
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	37, 293
AluBI	AGCT	2 cut(s)	27, 248
AluI	AGCT	2 cut(s)	27, 248
ApeKI	GCWGC	3 cut(s)	15, 304, 361
AsiGI	ACCGGT	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	193, 201
AsuC2I	CCSGG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	193, 201
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BbrPI	CACGTG	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	27, 291, 348
BccI	CCATC	3 cut(s)	338, 344, 348
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	2 cut(s)	245, 266
BfrI	CTTAAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	3 cut(s)	16, 305, 362
BlsI	GCNGC	3 cut(s)	17, 306, 363
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	193, 201
BmgT120I	GGNCC	2 cut(s)	193, 201
BmrFI	CCNGG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	1 cut(s)	195
BseGI	GGATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	27, 291, 348
BseYI	CCCAGC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	196, 204
BslFI	GGGAC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssMI	GATC	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	27, 291, 348
BsuI	GTATCC	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	359
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	193, 201
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	2 cut(s)	74, 215
CviJI	RGCY	4 cut(s)	18, 27, 248, 361
CviKI_1	RGCY	4 cut(s)	18, 27, 248, 361
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	193, 201
Eco57I	CTGAAG	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	222
FaeI	CATG	2 cut(s)	77, 218
FaiI	YATR	5 cut(s)	75, 110, 180, 216, 255
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	73, 214
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	16, 305, 362
Fsp4HI	GCNGC	3 cut(s)	16, 305, 362
FspBI	CTAG	2 cut(s)	245, 266
GluI	GCNGC	3 cut(s)	16, 305, 362
GsaI	CCCAGC	1 cut(s)	283
HapII	CCGG	2 cut(s)	196, 204
Hin1II	CATG	2 cut(s)	77, 218
HpaII	CCGG	2 cut(s)	196, 204
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	3 cut(s)	64, 100, 298
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	67, 105, 131
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	77, 218
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	3 cut(s)	209, 217, 293
Lsp1109I	GCAGC	3 cut(s)	27, 291, 348
MaeI	CTAG	2 cut(s)	245, 266
MaeII	ACGT	1 cut(s)	221
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	2 cut(s)	9, 129
MnlI	CCTC	2 cut(s)	127, 139
MseI	TTAA	2 cut(s)	23, 312
MslI	CAYNNNNRTG	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	2 cut(s)	196, 204
MspR9I	CCNGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	77, 218
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PagI	TCATGA	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	17, 306, 363
PmaCI	CACGTG	1 cut(s)	222
PmlI	CACGTG	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	222
PspCI	CACGTG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	193, 201
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	23, 312
SatI	GCNGC	3 cut(s)	16, 305, 362
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	193, 201
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	4 cut(s)	29, 150, 224, 250
SinI	GGWCC	2 cut(s)	193, 201
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	9, 129
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	2 cut(s)	245, 266
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	224
TasI	AATT	2 cut(s)	9, 129
Tru1I	TTAA	2 cut(s)	23, 312
Tru9I	TTAA	2 cut(s)	23, 312
TscAI	CASTG	1 cut(s)	86
TseI	GCWGC	3 cut(s)	15, 304, 361
TspDTI	ATGAA	2 cut(s)	158, 167
TspRI	CASTG	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	193, 201
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	2 cut(s)	245, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.