Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Reverse (-)

7931163 .. 7935726

Gene Structure 4564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGAAACAATCAAGGAAGGGAGTCCCATCAAGGAGTTACAAAGAGAAAACATTAATGCTAGAGAAAAAGACTTGCAAATGCATAAGGAGGCACTCTTCCACTTCGATTCATTTTTTGATGTCTTTGAGGCCACCATTCCTTTTGAGGACTGGCAACATCTGTTTTTCGAAAGAGCAGGACATGATAGAGATAATGAATGTAGTGTGGAGTCCTTCTATCCACACTTTAAGATCTGTCCTCATCCCTCCGAAGCCTTTCAGAAAATCGAAGCCAATCTCTCTATCAAGGGAGATCGATCGACAAAGCCCCTGGAATCCAGAGTGCTTGCCGGACTCCGACTGTGTCTGTTGGGTGGTGGTGTCAACCTTCGATGCACGGTGACAAGGGAGGAAGTTGCCGTTGAACCGGGTCGTACCCGACCTCCCAAAGGGTGGCTCAAAGCAGTGGCTTTGACGGCGTTTGGACCTGTGTTAGTTGGCAAGGTAGTGGTGCTTCGATGTGCAGAGACGAAGGCAAATTGCTTCATGATCCGTTCAAGGGGTGCGGCGGCGAGTGCGTGTTGGCTAGATCTTGTAGTAGCGCATGATCCTGGGCCAGTTACCTGCTACATAGAGGCGGGACAGGGGCTCCAGCAGAAGGTCTCGATAGCTACGGTGACGTTTATAGTTCAAATTGCTACTGAGTTGAGCTGGTTGTTCAACTACTTGCTTTTCTATTCTTTTGCCAAACCCTACTATGAGTTTGGATTGCCCGCAGAAGCGATAGAGACTCTTATTAGCACAGTCCACTACGAAAGCTCCAATCCTGTTGTGAGTTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATGAGAGAACTGAGCTGTGCCCATCTCTTTCATAAAGCTTTCTTGGACCGTTGGACAGGTCTTAATCAAGTCACGTGTCCCCTTTGCTGGAGTTCCCTAGCTCCCCTAGTAAGTTCAGAATCCCAGTCTCAAATTGAAGTGCTTCGTTTCAGGTTTTTCTCTTTCCAGTCAAATAGATATCGCGATTTATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

358

Amino Acids

40.58

Weight (kDa)

5.66

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	277 - 319	1.1e-08	Ring finger domain
zf-RING_11	PF17123	277 - 302	2.4e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccII	CGCG	1 cut(s)	1053
AciI	CCGC	4 cut(s)	548, 551, 620, 756
AclWI	GGATC	2 cut(s)	526, 584
AcuI	CTGAAG	1 cut(s)	843
AcvI	CACGTG	1 cut(s)	945
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	5 cut(s)	431, 435, 541, 640, 957
AflIII	ACRYGT	1 cut(s)	944
AgsI	TTSAA	5 cut(s)	407, 540, 674, 703, 1007
AjnI	CCWGG	2 cut(s)	312, 592
AluBI	AGCT	6 cut(s)	653, 693, 801, 885, 908, 971
AluI	AGCT	6 cut(s)	653, 693, 801, 885, 908, 971
Alw26I	GTCTC	4 cut(s)	503, 649, 764, 1002
AlwI	GGATC	2 cut(s)	526, 584
AoxI	GGCC	2 cut(s)	132, 596
AseI	ATTAAT	1 cut(s)	57
Asp700I	GAANNNNTTC	2 cut(s)	258, 1011
AspLEI	GCGC	2 cut(s)	586, 1071
AspS9I	GGNCC	3 cut(s)	467, 596, 916
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	394, 670
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	467, 916
BaeGI	GKGCMC	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbrPI	CACGTG	1 cut(s)	945
BccI	CCATC	2 cut(s)	38, 900
BceAI	ACGGC	2 cut(s)	386, 474
BciT130I	CCWGG	2 cut(s)	314, 594
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	4 cut(s)	503, 649, 764, 1002
BfaI	CTAG	4 cut(s)	63, 569, 968, 977
BfuAI	ACCTGC	1 cut(s)	614
BglII	AGATCT	2 cut(s)	234, 571
BisI	GCNGC	2 cut(s)	549, 552
BlsI	GCNGC	2 cut(s)	550, 553
Bme1390I	CCNGG	3 cut(s)	314, 411, 594
Bme18I	GGWCC	2 cut(s)	467, 916
BmgT120I	GGNCC	3 cut(s)	467, 596, 916
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	3 cut(s)	314, 411, 594
BmrI	ACTGGG	1 cut(s)	988
BmsI	GCATC	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	988
BpmI	CTGGAG	2 cut(s)	617, 979
Bpu14I	TTCGAA	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	945
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	2 cut(s)	312, 593
BsaXI	ACNNNNNCTCC	6 cut(s)	409, 439, 615, 645, 785, 815
Bsc4I	CCNNNNNNNGG	5 cut(s)	431, 435, 541, 640, 957
Bse1I	ACTGG	4 cut(s)	158, 599, 994, 1036
BseBI	CCWGG	2 cut(s)	314, 594
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	312, 593
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	5 cut(s)	431, 435, 541, 640, 957
BseMII	CTCAG	2 cut(s)	675, 872
BseNI	ACTGG	4 cut(s)	158, 599, 994, 1036
BseSI	GKGCMC	1 cut(s)	892
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	1053
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	134, 598
BshVI	ATCGAT	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	333, 410
BslFI	GGGAC	3 cut(s)	12, 636, 933
BslI	CCNNNNNNNGG	5 cut(s)	431, 435, 541, 640, 957
BsmAI	GTCTC	4 cut(s)	503, 649, 764, 1002
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	3 cut(s)	12, 636, 933
BsnI	GGCC	2 cut(s)	134, 598
Bso31I	GGTCTC	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	633, 892
Bsp143I	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
Bsp68I	TCGCGA	1 cut(s)	1053
BspACI	CCGC	4 cut(s)	548, 551, 620, 756
BspANI	GGCC	2 cut(s)	134, 598
BspCNI	CTCAG	2 cut(s)	676, 873
BspDI	ATCGAT	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	1053
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	632
BspMI	ACCTGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	526, 584
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	649
BsrI	ACTGG	4 cut(s)	158, 599, 994, 1036
BssECI	CCNNGG	2 cut(s)	312, 593
BssMI	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
Bst2UI	CCWGG	2 cut(s)	314, 594
Bst4CI	ACNGT	5 cut(s)	345, 382, 658, 787, 920
Bst6I	CTCTTC	2 cut(s)	104, 861
BstBAI	YACGTR	1 cut(s)	945
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	330, 756
BstDEI	CTNAG	2 cut(s)	684, 881
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	1053
BstHHI	GCGC	2 cut(s)	586, 1071
BstKTI	GATC	6 cut(s)	237, 298, 302, 534, 574, 592
BstMAI	GTCTC	4 cut(s)	503, 649, 764, 1002
BstMBI	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 557
BstNI	CCWGG	2 cut(s)	314, 594
BstSCI	CCNGG	3 cut(s)	312, 409, 592
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	1053
BstX2I	RGATCY	2 cut(s)	234, 571
BstYI	RGATCY	2 cut(s)	234, 571
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	134, 598
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
BtuMI	TCGCGA	1 cut(s)	1053
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	330, 756
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	2 cut(s)	586, 1071
Cfr13I	GGNCC	3 cut(s)	467, 596, 916
ClaI	ATCGAT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	3 cut(s)	185, 529, 587
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	684, 881
DpnI	GATC	6 cut(s)	236, 297, 301, 533, 573, 591
DpnII	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
Eam1104I	CTCTTC	2 cut(s)	104, 861
EarI	CTCTTC	2 cut(s)	104, 861
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	1049
Eco47I	GGWCC	2 cut(s)	467, 916
Eco57I	CTGAAG	1 cut(s)	843
Eco72I	CACGTG	1 cut(s)	945
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	312, 592
EcoRV	GATATC	1 cut(s)	1049
EcoT22I	ATGCAT	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	633
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	3 cut(s)	188, 532, 590
FaqI	GGGAC	3 cut(s)	12, 636, 933
FatI	CATG	3 cut(s)	184, 528, 586
FauI	CCCGC	2 cut(s)	613, 763
Fnu4HI	GCNGC	2 cut(s)	549, 552
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	2 cut(s)	549, 552
FspBI	CTAG	4 cut(s)	63, 569, 968, 977
GlaI	GCGC	2 cut(s)	585, 1070
GluI	GCNGC	2 cut(s)	549, 552
GsuI	CTGGAG	2 cut(s)	617, 979
HaeIII	GGCC	2 cut(s)	134, 598
HapII	CCGG	2 cut(s)	333, 410
HhaI	GCGC	2 cut(s)	586, 1071
Hin1II	CATG	3 cut(s)	188, 532, 590
Hin6I	GCGC	2 cut(s)	584, 1069
HinP1I	GCGC	2 cut(s)	584, 1069
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	906
HinfI	GANTC	7 cut(s)	25, 110, 212, 317, 336, 772, 989
HpaII	CCGG	2 cut(s)	333, 410
HphI	GGTGA	2 cut(s)	394, 670
Hpy166II	GTNNAC	2 cut(s)	367, 790
Hpy188I	TCNGA	5 cut(s)	253, 264, 341, 823, 988
Hpy188III	TCNNGA	4 cut(s)	321, 529, 646, 1052
Hpy8I	GTNNAC	2 cut(s)	367, 790
HpyAV	CCTTC	6 cut(s)	14, 226, 380, 508, 634, 854
HpyCH4III	ACNGT	5 cut(s)	345, 382, 658, 787, 920
HpyCH4IV	ACGT	2 cut(s)	662, 944
HpyCH4V	TGCA	5 cut(s)	79, 85, 378, 506, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 557
HpyF3I	CTNAG	2 cut(s)	684, 881
HpySE526I	ACGT	2 cut(s)	662, 944
Hsp92II	CATG	3 cut(s)	188, 532, 590
HspAI	GCGC	2 cut(s)	584, 1069
Kzo9I	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
LmnI	GCTCC	3 cut(s)	636, 806, 976
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	4 cut(s)	63, 569, 968, 977
MaeII	ACGT	2 cut(s)	662, 944
MaeIII	GTNAC	5 cut(s)	39, 382, 601, 658, 940
MalI	GATC	6 cut(s)	236, 297, 301, 533, 573, 591
MboI	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
MboII	GAAGA	5 cut(s)	17, 91, 836, 839, 878
MflI	RGATCY	2 cut(s)	234, 571
MhlI	GDGCHC	2 cut(s)	633, 892
MluCI	AATT	4 cut(s)	520, 675, 852, 1002
MlyI	GAGTC	4 cut(s)	34, 221, 330, 766
MmeI	TCCRAC	2 cut(s)	364, 902
MnlI	CCTC	9 cut(s)	85, 124, 142, 252, 259, 385, 435, 610, 850
Mph1103I	ATGCAT	1 cut(s)	87
MroXI	GAANNNNTTC	2 cut(s)	258, 1011
MseI	TTAA	3 cut(s)	57, 231, 933
MspI	CCGG	2 cut(s)	333, 410
MspR9I	CCNGG	3 cut(s)	314, 411, 594
MvaI	CCWGG	2 cut(s)	314, 594
MvnI	CGCG	1 cut(s)	1053
MwoI	GCNNNNNNNGC	2 cut(s)	458, 557
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
NlaIII	CATG	3 cut(s)	188, 532, 590
NlaIV	GGNNCC	1 cut(s)	632
NmuCI	GTSAC	3 cut(s)	382, 658, 940
NruI	TCGCGA	1 cut(s)	1053
NsiI	ATGCAT	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	171
PagI	TCATGA	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	258, 1011
PfeI	GAWTC	3 cut(s)	110, 317, 989
PflFI	GACNNNGTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	550, 553
Ple19I	CGATCG	1 cut(s)	302
PleI	GAGTC	4 cut(s)	33, 220, 330, 766
PmaCI	CACGTG	1 cut(s)	945
PmlI	CACGTG	1 cut(s)	945
PpsI	GAGTC	4 cut(s)	33, 220, 330, 766
Ppu21I	YACGTR	1 cut(s)	945
PshBI	ATTAAT	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	312, 592
PspCI	CACGTG	1 cut(s)	945
PspGI	CCWGG	2 cut(s)	312, 592
PspN4I	GGNNCC	1 cut(s)	632
PspPI	GGNCC	3 cut(s)	467, 596, 916
PsuI	RGATCY	2 cut(s)	234, 571
PsyI	GACNNNGTC	1 cut(s)	345
PvuI	CGATCG	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	1053
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	57, 231, 933
SatI	GCNGC	2 cut(s)	549, 552
Sau3AI	GATC	6 cut(s)	234, 295, 299, 531, 571, 589
Sau96I	GGNCC	3 cut(s)	467, 596, 916
SchI	GAGTC	4 cut(s)	34, 221, 330, 766
ScrFI	CCNGG	3 cut(s)	314, 411, 594
SduI	GDGCHC	2 cut(s)	633, 892
SfaNI	GCATC	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	467, 916
Sse9I	AATT	4 cut(s)	520, 675, 852, 1002
SsiI	CCGC	4 cut(s)	548, 551, 620, 756
SspMI	CTAG	4 cut(s)	63, 569, 968, 977
StyD4I	CCNGG	3 cut(s)	312, 409, 592
TaaI	ACNGT	5 cut(s)	345, 382, 658, 787, 920
TaiI	ACGT	2 cut(s)	665, 947
TaqI	TCGA	8 cut(s)	108, 171, 270, 298, 302, 373, 499, 647
TasI	AATT	4 cut(s)	520, 675, 852, 1002
TauI	GCSGC	2 cut(s)	551, 554
TfiI	GAWTC	3 cut(s)	110, 317, 989
Tru1I	TTAA	3 cut(s)	57, 231, 933
Tru9I	TTAA	3 cut(s)	57, 231, 933
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	3 cut(s)	382, 658, 940
Tsp45I	GTSAC	3 cut(s)	382, 658, 940
TspDTI	ATGAA	4 cut(s)	102, 213, 517, 890
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	453
Tth111I	GACNNNGTC	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	467, 916
VspI	ATTAAT	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	429
XmnI	GAANNNNTTC	2 cut(s)	258, 1011
XspI	CTAG	4 cut(s)	63, 569, 968, 977
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.