Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003695

Physical Location & Seq

Genomic Coordinates Forward (+)

59816259 .. 59816678

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTGGAAGTTTATAGTTCAAATTGCTACCCAGTTGAGCTGGTTGTTCAACTACTTGCTTTTCTATTCTTTTGCCAAACCCTACTATGAGTTTGGATTGCCCGCAGAAGCTATAGAGACTCTTATTAGCACAGTCCACTACGAAAGCTCCAACCCTGTTGTGAGTTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGGGGAAGCAGAAGAGATGAGAGAACTGAGATGTGCTCATCTCTTTCATAAAGCTTGCTTGGACCGTTGGACAGATCTTAATCATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAGTAAGTTCAGAATCCCAGTCTCAAATTGAAGTGCTTCGTTTTAGGTTTTGCTCTTTCCAGTCAAATAGATATTGTGATATATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

139

Amino Acids

16.37

Weight (kDa)

5.54

Isoelectric Point (pI)

75.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	59 - 102	1.5e-11	Ring finger domain
zf-RING_11	PF17123	59 - 87	3.7e-08	RING-like zinc finger
zf-C3HC4	PF00097	60 - 101	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28501
malus_domestica	MD13G1051300.v1.1 MD13G1051400.v1.1 MD16G1051600.v1.1
prunus_persica	Prupe.1G301000_v2.0.a1 Prupe.1G303200_v2.0.a1
pyrus_communis	pycom13g04530 pycom13g04540 pycom16g04530
rosa_chinensis	RchiOBHm_Chr1g0325421 RchiOBHm_Chr1g0325441 RchiOBHm_Chr4g0436501 RchiOBHm_Chr4g0436511 RchiOBHm_Chr5g0038881
rosa_laevigata	RLG00000006512 RLG00000006513 RLG00000030137 RLG00000030138 RLG00000033878
rosa_multiflora	Rmu_sc0001779.1_g000014 Rmu_sc0003130.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377630
rosa_rugosa	Rorug01G0052300 Rorug01G0052400 Rorug04G0294400
rosa_samantha	Rh1AG067200 Rh1DG073300 Rh4BG357400 Rh4BG357500 Rh4CG371800 Rh4DG351300 Rh5BG266300 Rh5CG299300
rosa_wichuraiana	Rw1G005650 Rw4G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	20, 49, 353
AluBI	AGCT	5 cut(s)	39, 110, 147, 254, 317
AluI	AGCT	5 cut(s)	39, 110, 147, 254, 317
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	110, 348
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BbrPI	CACGTG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	110, 348
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrI	ACTGGG	3 cut(s)	25, 317, 334
BmuI	ACTGGG	3 cut(s)	25, 317, 334
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BsaAI	YACGTR	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	4 cut(s)	31, 323, 340, 382
Bse8I	GATNNNNATC	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	4 cut(s)	31, 323, 340, 382
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	2 cut(s)	110, 348
BsmFI	GGGAC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	219
BsrI	ACTGG	4 cut(s)	31, 323, 340, 382
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	133, 266
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	102, 256
BstDEI	CTNAG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	110, 348
BstMBI	GATC	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	102, 256
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	5 cut(s)	39, 110, 147, 254, 317
CviKI_1	RGCY	5 cut(s)	39, 110, 147, 254, 317
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	189
Eco72I	CACGTG	1 cut(s)	291
FaeI	CATG	1 cut(s)	287
FaiI	YATR	8 cut(s)	14, 87, 113, 193, 249, 285, 404, 406
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	283
FauI	CCCGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	416
HapII	CCGG	1 cut(s)	304
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	118, 335
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	169, 334
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	133, 266
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	152, 322
LpnPI	CCDG	7 cut(s)	25, 44, 168, 317, 336, 353, 395
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	182, 185, 224
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	3 cut(s)	21, 198, 348
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	174, 248
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	304
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	291
PmlI	CACGTG	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	41, 112, 149, 256, 293, 319, 371
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	21, 198, 348
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	133, 266
TaiI	ACGT	1 cut(s)	293
TasI	AATT	3 cut(s)	21, 198, 348
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.