Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

32819372 .. 32821552

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTAAGAATGATGTGAAGCTTATAGGAGCATGGCCGAGCCCATTTGTGTTGAGGGCTCGGATTGCCTTGAACGTCAAGTCTGTAGAGTACGAATTTCTTGAGGAGATGTTGGGAACCAAGAGCGAGCTTCTGCTCAAATCGAACCCTGTTCACAAGAAAATCCCGGTTCTGATTCATAACGACAAACCCATCTGTGAATCTCTTATCATTGTGGAGTACATCGACGAGGCTTGGGCCTCTGGCCCGTCCATCCTGCCTTCTGATCCCTACGACCGCGCCATTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCGGCGATGAAAGGCATCGCTGCCGCTACAGATGACGAGGCGAGGAAGGCAGCAGTCGGGCAAGTGGCAGAAGGTCTAGCGCTGTTGGAGGAAGCATTTCAAAAGATCAGCAAAGGAAAGAGTTTCTTTGGGGGAGATCACATTGGTTACCTTGACATTGCATTTGGGGGACTTTTGGGGTGGTTTAGAGTGACTGAGGGAATGGGTGGGATCAAGCTGATTAACGAAACAAAGACGCCGGGGTTGCTAAAATGGGCTGAGAAGTTTGCTGCAGATCCTGCCGTGAAAGATGTTCTGCCAGAGATAGAGAAGCTTACTGAGTTTAGTAAGGTTATTGTAGCCAAATTAAGAGCAGCTGCAGCTTCTGGGGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

234

Amino Acids

25.5

Weight (kDa)

6.35

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	2.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 78	5.8e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	5.4e-11	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	98 - 201	3e-06	Glutathione S-transferase, C-terminal domain
GST_C_7	PF22041	118 - 175	1.9e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	121 - 194	1.1e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	277, 348
AclWI	GGATC	3 cut(s)	260, 542, 593
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	92, 221
AfeI	AGCGCT	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 425
AluBI	AGCT	6 cut(s)	22, 130, 541, 637, 680, 686
AluI	AGCT	6 cut(s)	22, 130, 541, 637, 680, 686
AlwI	GGATC	3 cut(s)	260, 542, 593
AlwNI	CAGNNNCTG	3 cut(s)	294, 602, 689
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	4 cut(s)	35, 237, 244, 693
ApeKI	GCWGC	7 cut(s)	299, 344, 374, 593, 677, 680, 683
ApoI	RAATTY	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp700I	GAANNNNTTC	2 cut(s)	320, 420
AspLEI	GCGC	2 cut(s)	281, 406
AspS9I	GGNCC	3 cut(s)	237, 245, 693
AsuC2I	CCSGG	3 cut(s)	167, 326, 564
BanII	GRGCYC	2 cut(s)	44, 61
BbvI	GCAGC	7 cut(s)	286, 331, 386, 580, 667, 689, 695
BccI	CCATC	2 cut(s)	200, 260
BceAI	ACGGC	1 cut(s)	590
BcnI	CCSGG	3 cut(s)	167, 326, 564
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	4 cut(s)	84, 351, 594, 681
BfoI	RGCGCY	1 cut(s)	407
BisI	GCNGC	8 cut(s)	300, 345, 348, 375, 594, 678, 681, 684
BlsI	GCNGC	8 cut(s)	301, 346, 349, 376, 595, 679, 682, 685
Bme1390I	CCNGG	3 cut(s)	167, 326, 564
BmgT120I	GGNCC	3 cut(s)	237, 245, 693
BmiI	GGNNCC	3 cut(s)	118, 323, 694
BmrFI	CCNGG	3 cut(s)	167, 326, 564
BmsI	GCATC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	3 cut(s)	167, 326, 564
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	282, 480
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	282, 480
BseMII	CTCAG	3 cut(s)	510, 573, 633
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	7 cut(s)	286, 331, 386, 580, 667, 689, 695
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	37, 239, 246, 695
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	167, 326, 563
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	4 cut(s)	37, 239, 246, 695
Bsp1286I	GDGCHC	2 cut(s)	44, 61
Bsp143I	GATC	5 cut(s)	265, 429, 460, 534, 598
BspACI	CCGC	2 cut(s)	277, 348
BspANI	GGCC	4 cut(s)	37, 239, 246, 695
BspCNI	CTCAG	3 cut(s)	511, 574, 634
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	118, 323, 694
BspMAI	CTGCAG	2 cut(s)	598, 685
BspPI	GGATC	3 cut(s)	260, 542, 593
BsrDI	GCAATG	2 cut(s)	282, 480
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	5 cut(s)	265, 429, 460, 534, 598
BssNI	GRCGYC	1 cut(s)	560
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	4 cut(s)	6, 519, 582, 642
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	281, 406
BstKTI	GATC	5 cut(s)	268, 432, 463, 537, 601
BstMBI	GATC	5 cut(s)	265, 429, 460, 534, 598
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 371, 568, 602, 683, 692
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	165, 324, 562
BstSFI	CTRYAG	4 cut(s)	84, 351, 594, 681
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	7 cut(s)	286, 331, 386, 580, 667, 689, 695
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	4 cut(s)	37, 239, 246, 695
BtgZI	GCGATG	2 cut(s)	325, 344
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	3 cut(s)	294, 602, 689
CfoI	GCGC	2 cut(s)	281, 406
Cfr13I	GGNCC	3 cut(s)	237, 245, 693
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	91, 220
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	2 cut(s)	91, 220
DdeI	CTNAG	4 cut(s)	6, 519, 582, 642
DpnI	GATC	5 cut(s)	267, 431, 462, 536, 600
DpnII	GATC	5 cut(s)	265, 429, 460, 534, 598
EaeI	YGGCCR	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	44, 61
Eco47III	AGCGCT	1 cut(s)	405
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	44, 61
FaeI	CATG	1 cut(s)	36
FaiI	YATR	4 cut(s)	26, 34, 180, 306
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	8 cut(s)	300, 345, 348, 375, 594, 678, 681, 684
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	44, 61
Fsp4HI	GCNGC	8 cut(s)	300, 345, 348, 375, 594, 678, 681, 684
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	280, 405
GluI	GCNGC	8 cut(s)	300, 345, 348, 375, 594, 678, 681, 684
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	4 cut(s)	37, 239, 246, 695
HapII	CCGG	3 cut(s)	167, 326, 563
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	281, 406
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	279, 404
HinP1I	GCGC	2 cut(s)	279, 404
HindIII	AAGCTT	2 cut(s)	20, 635
HinfI	GANTC	3 cut(s)	175, 200, 291
HpaII	CCGG	3 cut(s)	167, 326, 563
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	63, 174, 265
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 364, 389
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	485, 596, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 371, 568, 602, 683, 692
HpyF3I	CTNAG	4 cut(s)	6, 519, 582, 642
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	279, 404
Kzo9I	GATC	5 cut(s)	265, 429, 460, 534, 598
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	7 cut(s)	286, 331, 386, 580, 667, 689, 695
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	470, 514
MalI	GATC	5 cut(s)	267, 431, 462, 536, 600
MboI	GATC	5 cut(s)	265, 429, 460, 534, 598
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	44, 61
MluCI	AATT	2 cut(s)	95, 668
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	8 cut(s)	48, 97, 223, 250, 355, 360, 406, 514
MroXI	GAANNNNTTC	2 cut(s)	320, 420
MseI	TTAA	2 cut(s)	546, 671
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	3 cut(s)	167, 326, 563
MspR9I	CCNGG	3 cut(s)	167, 326, 564
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	6 cut(s)	65, 371, 568, 602, 683, 692
NciI	CCSGG	3 cut(s)	167, 326, 564
NdeII	GATC	5 cut(s)	265, 429, 460, 534, 598
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	3 cut(s)	118, 323, 694
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	514
PdmI	GAANNNNTTC	2 cut(s)	320, 420
PfeI	GAWTC	3 cut(s)	175, 200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	8 cut(s)	301, 346, 349, 376, 595, 679, 682, 685
PspEI	GGTNACC	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	118, 323, 694
PspPI	GGNCC	3 cut(s)	237, 245, 693
PstI	CTGCAG	2 cut(s)	598, 685
PstNI	CAGNNNCTG	3 cut(s)	294, 602, 689
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	2 cut(s)	92, 221
RsaNI	GTAC	2 cut(s)	91, 220
SaqAI	TTAA	2 cut(s)	546, 671
SatI	GCNGC	8 cut(s)	300, 345, 348, 375, 594, 678, 681, 684
Sau3AI	GATC	5 cut(s)	265, 429, 460, 534, 598
Sau96I	GGNCC	3 cut(s)	237, 245, 693
ScrFI	CCNGG	3 cut(s)	167, 326, 564
SduI	GDGCHC	2 cut(s)	44, 61
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	4 cut(s)	84, 351, 594, 681
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	95, 668
SsiI	CCGC	2 cut(s)	277, 348
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	165, 324, 562
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	143, 225
TasI	AATT	2 cut(s)	95, 668
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	175, 200, 291
Tru1I	TTAA	2 cut(s)	546, 671
Tru9I	TTAA	2 cut(s)	546, 671
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	7 cut(s)	299, 344, 374, 593, 677, 680, 683
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	167, 347
Van91I	CCANNNNNTGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	95
XmnI	GAANNNNTTC	2 cut(s)	320, 420
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.