Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Reverse (-)

5756422 .. 5758027

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1082100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCATTTGTACGATTTTTGTGTTGTGAGTGGCTTCCATCGCTGAGAGGCGTTGCTGCCGCTGAAGGAGACGAGGCAAAGAAGGCAGCAGTCGAGCAAGTTGCAGAAGGGCTGGCTCAAATGGAGGAAGCCTTTCAAAAGACCAGCAAAGGCAAGGACTTCTTCAGTGGGGACAAAATTGGGTACCTGGACATTGCATTCGGGTGCTTCTTGGGGTGGCTCAGAGTGACAGAGAAAATGAATGGGGTCAAACTTCTGGACGAAGCAAAGATCCCAGGGCTGGCCAAATGGGCTGAGAAGTTCAGTGCAGATCCTGCTGTGAAGGATGTTATGCCGGAGACTGACAAGTTGGCTGAGGTTACTAAGATTCTTAAGGCCAGATTGAGAGCTGCAGCAGTCTTGGTAGAGTCGGAGGGTGTAAAAGCAGAGAAGATGCAAAAGTGCTTGCATTTCAGCAGTCTTGGTAGAGTCGGAGGGTGTAAAAGCAGAGACGATGCAAAAGTGCTCGCATTCCGGAAAATGAGCAAAGCAAAAGGTAAGGCTGATACGGCGTTACCATGGGCAAATCGTAAATACAACCGCTTCAAGGGCCAACTTAAGACCCAAGAGACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

206

Amino Acids

22.63

Weight (kDa)

9.29

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	21 - 105	2e-09	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	24 - 109	1.8e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	25 - 99	1.8e-09	Glutathione S-transferase, C-terminal domain
GST_C_7	PF22041	25 - 79	8.2e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	513
AciI	CCGC	2 cut(s)	60, 580
AclWI	GGATC	2 cut(s)	265, 305
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	84, 148
AfaI	GTAC	2 cut(s)	12, 185
AfiI	CCNNNNNNNGG	2 cut(s)	280, 586
AflII	CTTAAG	2 cut(s)	371, 596
AgsI	TTSAA	2 cut(s)	137, 586
AjnI	CCWGG	2 cut(s)	186, 274
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	4 cut(s)	63, 332, 483, 602
AlwI	GGATC	2 cut(s)	265, 305
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	513
AoxI	GGCC	3 cut(s)	282, 375, 589
ApeKI	GCWGC	4 cut(s)	56, 86, 389, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	132
Asp718I	GGTACC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	507
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	43, 98, 376, 404
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	564
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	2 cut(s)	188, 276
BcoDI	GTCTC	4 cut(s)	63, 332, 483, 602
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	2 cut(s)	371, 596
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	5 cut(s)	57, 60, 87, 390, 393
BlsI	GCNGC	5 cut(s)	58, 61, 88, 391, 394
Bme1390I	CCNGG	2 cut(s)	188, 276
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	188, 276
BmsI	GCATC	2 cut(s)	423, 484
Bpu10I	CCTNAGC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	274, 275, 557
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 586
Bse3DI	GCAATG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	188, 276
BseDI	CCNNGG	3 cut(s)	274, 275, 557
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	280, 586
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	4 cut(s)	35, 235, 285, 345
BseXI	GCAGC	4 cut(s)	43, 98, 376, 404
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	284, 377, 591
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	335, 514
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	280, 586
BsmAI	GTCTC	4 cut(s)	63, 332, 483, 602
BsmBI	CGTCTC	2 cut(s)	63, 483
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	197, 509
BsnI	GGCC	3 cut(s)	284, 377, 591
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp13I	TCCGGA	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	270, 310
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	2 cut(s)	60, 580
BspANI	GGCC	3 cut(s)	284, 377, 591
BspCNI	CTCAG	4 cut(s)	36, 234, 286, 346
BspEI	TCCGGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	2 cut(s)	265, 305
BspT107I	GGYRCC	1 cut(s)	183
BspTI	CTTAAG	2 cut(s)	371, 596
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	274, 275, 557
BssMI	GATC	2 cut(s)	270, 310
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	188, 276
BstAFI	CTTAAG	2 cut(s)	371, 596
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	114, 282, 446, 507
BstDEI	CTNAG	5 cut(s)	44, 221, 294, 354, 363
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	273, 313
BstMAI	GTCTC	4 cut(s)	63, 332, 483, 602
BstMBI	GATC	2 cut(s)	270, 310
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 83, 290, 314, 548, 588
BstNI	CCWGG	2 cut(s)	188, 276
BstSCI	CCNGG	2 cut(s)	186, 274
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	43, 98, 376, 404
BstX2I	RGATCY	2 cut(s)	270, 310
BstYI	RGATCY	2 cut(s)	270, 310
BsuRI	GGCC	3 cut(s)	284, 377, 591
BtgI	CCRYGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	172, 310
Cac8I	GCNNGC	4 cut(s)	114, 282, 446, 507
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	11, 184
CviAII	CATG	1 cut(s)	558
CviQI	GTAC	2 cut(s)	11, 184
DdeI	CTNAG	5 cut(s)	44, 221, 294, 354, 363
DpnI	GATC	2 cut(s)	272, 312
DpnII	GATC	2 cut(s)	270, 310
EaeI	YGGCCR	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	602
Eco57I	CTGAAG	2 cut(s)	84, 148
EcoRII	CCWGG	2 cut(s)	186, 274
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
Esp3I	CGTCTC	2 cut(s)	63, 483
FaeI	CATG	1 cut(s)	561
FaiI	YATR	2 cut(s)	332, 559
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	557
Fnu4HI	GCNGC	5 cut(s)	57, 60, 87, 390, 393
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	5 cut(s)	57, 60, 87, 390, 393
GluI	GCNGC	5 cut(s)	57, 60, 87, 390, 393
HaeIII	GGCC	3 cut(s)	284, 377, 591
HapII	CCGG	2 cut(s)	335, 514
Hin1II	CATG	1 cut(s)	561
HinfI	GANTC	3 cut(s)	367, 407, 468
HpaII	CCGG	2 cut(s)	335, 514
Hpy188I	TCNGA	3 cut(s)	224, 412, 473
Hpy188III	TCNNGA	2 cut(s)	257, 514
HpyAV	CCTTC	4 cut(s)	59, 76, 101, 316
HpyCH4V	TGCA	7 cut(s)	104, 197, 308, 392, 436, 448, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 83, 290, 314, 548, 588
HpyF3I	CTNAG	5 cut(s)	44, 221, 294, 354, 363
Hsp92II	CATG	1 cut(s)	561
Kpn2I	TCCGGA	1 cut(s)	513
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	270, 310
Lsp1109I	GCAGC	4 cut(s)	43, 98, 376, 404
LweI	GCATC	2 cut(s)	423, 484
MaeIII	GTNAC	3 cut(s)	226, 358, 552
MalI	GATC	2 cut(s)	272, 312
MboI	GATC	2 cut(s)	270, 310
MboII	GAAGA	2 cut(s)	154, 442
MflI	RGATCY	2 cut(s)	270, 310
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	416, 477
MmeI	TCCRAC	2 cut(s)	390, 451
MnlI	CCTC	6 cut(s)	41, 67, 118, 349, 406, 467
Mox20I	TGGCCA	1 cut(s)	284
MroI	TCCGGA	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	372, 597
MslI	CAYNNNNRTG	1 cut(s)	202
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	2 cut(s)	371, 596
MspI	CCGG	2 cut(s)	335, 514
MspR9I	CCNGG	2 cut(s)	188, 276
Mva1269I	GAATGC	2 cut(s)	197, 509
MvaI	CCWGG	2 cut(s)	188, 276
MwoI	GCNNNNNNNGC	6 cut(s)	40, 83, 290, 314, 548, 588
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	270, 310
NlaIII	CATG	1 cut(s)	561
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	226
PasI	CCCWGGG	1 cut(s)	275
PctI	GAATGC	2 cut(s)	197, 509
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	58, 61, 88, 391, 394
PleI	GAGTC	2 cut(s)	415, 476
PpsI	GAGTC	2 cut(s)	415, 476
Psp6I	CCWGG	2 cut(s)	186, 274
PspGI	CCWGG	2 cut(s)	186, 274
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	270, 310
RsaI	GTAC	2 cut(s)	12, 185
RsaNI	GTAC	2 cut(s)	11, 184
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	372, 597
SatI	GCNGC	5 cut(s)	57, 60, 87, 390, 393
Sau3AI	GATC	2 cut(s)	270, 310
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	2 cut(s)	416, 477
ScrFI	CCNGG	2 cut(s)	188, 276
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	4 cut(s)	189, 360, 391, 538
SfaNI	GCATC	2 cut(s)	423, 484
SfcI	CTRYAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	371, 596
SmoI	CTYRAG	2 cut(s)	371, 596
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	2 cut(s)	60, 580
StyD4I	CCNGG	2 cut(s)	186, 274
StyI	CCWWGG	1 cut(s)	557
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	372, 597
Tru9I	TTAA	2 cut(s)	372, 597
TscAI	CASTG	2 cut(s)	172, 310
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	56, 86, 389, 392
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	172, 310
Vha464I	CTTAAG	2 cut(s)	371, 596
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.