Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

64746240 .. 64748138

Gene Structure 1899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTAAGAATGATGTGAAGCTTATAGGAGCATGGCCGAGCCCATTTGTGTTGAGGGCTCGGATCGCCTTGAATGTTAAGTCTGTCGAGTACGAGTTTCTTCAGGAGACACTGGAACCCAAGAGCGAGCTTCTGCTCAAATCAAACCCGGTTCATAAGAAAATCCCGGTTCTGCTTCACAATGACAAACCCATCTGTGAATCTCTCATCATTGTGGAATACATCGACGAGGCTTGGGCCTCTGGCCCATCTATCCTACCTTCTGATCCCTATGAGCGCGCTATTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCTGCGATGAAAGGCATCCTTGGTGCTCAAGATGACGAGGCAAGGATGGCAGCAGTCGGGCAAGTGACAGAAGGTCTAGTGCTGTTGGAGGAAGCATTTCAAAAGATAAGCAAAGGAAAGAGTTTCTTCGGCGGAGATCACATTGGTTACCTTGACATTGCAGTTGGGGGATTTTTGGCGTGGATCAGAGTGACTGAAGGGATGGGTGGGATCAAGCTGCTTGATGAAACAAAGACGCCGGGGCTGCTCAAGTGGGCTGAGAAGTTTGCTGCAGATCCTGCTGTGAAAGATGTTCTGCCAGAGACACAGAAGCTTGCTGAATTTAGTAAGATTATTATAGCCAAATTAAGAGCTGCTGCCGCTGCTAAGGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

233

Amino Acids

25.67

Weight (kDa)

6.35

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	2.1e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 78	5.9e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	2.1e-11	Glutathione S-transferase, N-terminal domain
GST_C_7	PF22041	120 - 175	4.6e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	134 - 195	5.6e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	456, 684
AclWI	GGATC	5 cut(s)	71, 260, 515, 542, 593
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	2 cut(s)	86, 540
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 425
AhdI	GACNNNNNGTC	1 cut(s)	396
AluBI	AGCT	5 cut(s)	22, 130, 541, 637, 677
AluI	AGCT	5 cut(s)	22, 130, 541, 637, 677
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	101, 620
AlwI	GGATC	5 cut(s)	71, 260, 515, 542, 593
AlwNI	CAGNNNCTG	2 cut(s)	294, 602
AoxI	GGCC	4 cut(s)	35, 237, 244, 693
ApeKI	GCWGC	8 cut(s)	299, 374, 541, 568, 593, 677, 680, 686
ApoI	RAATTY	1 cut(s)	644
Asp700I	GAANNNNTTC	2 cut(s)	320, 420
AspLEI	GCGC	2 cut(s)	279, 281
AspS9I	GGNCC	2 cut(s)	237, 245
AsuC2I	CCSGG	3 cut(s)	149, 167, 564
BanII	GRGCYC	2 cut(s)	44, 61
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	8 cut(s)	286, 386, 528, 555, 580, 664, 667, 673
BccI	CCATC	4 cut(s)	200, 256, 364, 520
BcnI	CCSGG	3 cut(s)	149, 167, 564
BcoDI	GTCTC	2 cut(s)	101, 620
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	9 cut(s)	300, 375, 542, 569, 594, 678, 681, 684, 687
BlsI	GCNGC	9 cut(s)	301, 376, 543, 570, 595, 679, 682, 685, 688
Bme1390I	CCNGG	3 cut(s)	149, 167, 564
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	237, 245
BmiI	GGNNCC	2 cut(s)	117, 323
BmrFI	CCNGG	3 cut(s)	149, 167, 564
BmsI	GCATC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	336, 557
BpuMI	CCSGG	3 cut(s)	149, 167, 564
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	343, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	343, 563
BseGI	GGATG	3 cut(s)	339, 375, 531
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	117
BsePI	GCGCGC	1 cut(s)	277
BseXI	GCAGC	8 cut(s)	286, 386, 528, 555, 580, 664, 667, 673
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	4 cut(s)	37, 239, 246, 695
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	149, 167, 563
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	2 cut(s)	101, 620
BsnI	GGCC	4 cut(s)	37, 239, 246, 695
Bsp1286I	GDGCHC	3 cut(s)	44, 61, 352
Bsp143I	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
BspACI	CCGC	2 cut(s)	456, 684
BspANI	GGCC	4 cut(s)	37, 239, 246, 695
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	117, 323
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	5 cut(s)	71, 260, 515, 542, 593
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	343, 563
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
BssNI	GRCGYC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	128, 279, 639
BstDEI	CTNAG	3 cut(s)	6, 582, 690
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	339, 375, 531
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	279, 281
BstKTI	GATC	6 cut(s)	66, 268, 463, 510, 537, 601
BstMAI	GTCTC	2 cut(s)	101, 620
BstMBI	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 371, 568, 602, 683, 686, 692
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	147, 165, 562
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	8 cut(s)	286, 386, 528, 555, 580, 664, 667, 673
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	4 cut(s)	37, 239, 246, 695
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	339, 375, 531
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	128, 279, 639
CaiI	CAGNNNCTG	2 cut(s)	294, 602
CfoI	GCGC	2 cut(s)	279, 281
Cfr13I	GGNCC	2 cut(s)	237, 245
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	6, 582, 690
DpnI	GATC	6 cut(s)	65, 267, 462, 509, 536, 600
DpnII	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
DriI	GACNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	35
Eam1105I	GACNNNNNGTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	2 cut(s)	44, 61
Eco57I	CTGAAG	2 cut(s)	86, 540
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	2 cut(s)	44, 61
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	36
FaiI	YATR	6 cut(s)	26, 34, 156, 273, 306, 662
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 434, 466
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	9 cut(s)	300, 375, 542, 569, 594, 678, 681, 684, 687
FokI	GGATG	3 cut(s)	326, 382, 538
FriOI	GRGCYC	2 cut(s)	44, 61
Fsp4HI	GCNGC	9 cut(s)	300, 375, 542, 569, 594, 678, 681, 684, 687
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	278, 280
GluI	GCNGC	9 cut(s)	300, 375, 542, 569, 594, 678, 681, 684, 687
HaeIII	GGCC	4 cut(s)	37, 239, 246, 695
HapII	CCGG	3 cut(s)	149, 167, 563
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	279, 281
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	277, 279
HinP1I	GCGC	2 cut(s)	277, 279
HindIII	AAGCTT	2 cut(s)	20, 635
HinfI	GANTC	2 cut(s)	200, 291
HpaII	CCGG	3 cut(s)	149, 167, 563
Hpy188I	TCNGA	3 cut(s)	63, 265, 512
Hpy188III	TCNNGA	2 cut(s)	104, 353
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 389, 515
HpyCH4V	TGCA	2 cut(s)	485, 596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 371, 568, 602, 683, 686, 692
HpyF3I	CTNAG	3 cut(s)	6, 582, 690
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	277, 279
Kzo9I	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	8 cut(s)	286, 386, 528, 555, 580, 664, 667, 673
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	3 cut(s)	388, 470, 514
MalI	GATC	6 cut(s)	65, 267, 462, 509, 536, 600
MboI	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
MboII	GAAGA	2 cut(s)	92, 442
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	3 cut(s)	44, 61, 352
MluCI	AATT	2 cut(s)	644, 668
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	48, 223, 250, 355, 406
MroXI	GAANNNNTTC	2 cut(s)	320, 420
MseI	TTAA	2 cut(s)	78, 671
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	3 cut(s)	149, 167, 563
MspR9I	CCNGG	3 cut(s)	149, 167, 564
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	7 cut(s)	65, 371, 568, 602, 683, 686, 692
NciI	CCSGG	3 cut(s)	149, 167, 564
NdeII	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	117, 323
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	388, 514
PauI	GCGCGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	320, 420
PfeI	GAWTC	2 cut(s)	200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	9 cut(s)	301, 376, 543, 570, 595, 679, 682, 685, 688
PspEI	GGTNACC	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	117, 323
PspPI	GGNCC	2 cut(s)	237, 245
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	2 cut(s)	294, 602
PsuI	RGATCY	1 cut(s)	598
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	78, 671
SatI	GCNGC	9 cut(s)	300, 375, 542, 569, 594, 678, 681, 684, 687
Sau3AI	GATC	6 cut(s)	63, 265, 460, 507, 534, 598
Sau96I	GGNCC	2 cut(s)	237, 245
ScrFI	CCNGG	3 cut(s)	149, 167, 564
SduI	GDGCHC	3 cut(s)	44, 61, 352
SetI	ASST	8 cut(s)	24, 132, 262, 400, 477, 543, 639, 679
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	351, 572
SmoI	CTYRAG	2 cut(s)	351, 572
Sse9I	AATT	2 cut(s)	644, 668
SsiI	CCGC	2 cut(s)	456, 684
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	147, 165, 562
StyI	CCWWGG	1 cut(s)	343
TaqI	TCGA	2 cut(s)	87, 225
TasI	AATT	2 cut(s)	644, 668
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	200, 291
Tru1I	TTAA	2 cut(s)	78, 671
Tru9I	TTAA	2 cut(s)	78, 671
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	388, 514
TseI	GCWGC	8 cut(s)	299, 374, 541, 568, 593, 677, 680, 686
Tsp45I	GTSAC	2 cut(s)	388, 514
TspDTI	ATGAA	3 cut(s)	143, 347, 564
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	644
XmnI	GAANNNNTTC	2 cut(s)	320, 420
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.