Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Reverse (-)

1500154 .. 1502681

Gene Structure 2528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTAAGAATGATGTGAAGCTTGTAGGAGCATGGCCGAGTCCATTTGTGTTGAGGGCTCGGATCGCCTTGAATGTTAAGTCTGTCGAGTACGAGTTTCTTCAGGAGACACTGGAACCCAAGAGCGAGCTTCTGCTCAAATCAAACCCGGTTCATAAGAAAATCCCGGTTCTGCTTCACAATGACAAACCCATCTGTGAATCTCTCATCATTGTGGAATACATCGACGAGGCTTGGGCCTCTGGCCCATCTATCCTACCTTCTGATCCCTATGAGCGCGCTATTGCCAGATTCTGGGCTGCTTATGTTGATGAGAAGTGGTTCCCTGCGATGAAAGGCATCCTTGGTGCTCAAGATGAGGCAAGGATGGCAGCAGTCGGTCAAGTGACAGAAGGTCTAGCGCTGTTGGAGGAAGCATTTCAAAAGATAAGCAAAGGAAAGAGTTTCTTCGGCGGAGATCATATTGGTTACCTTGACATTGCATTTGGGGGATTTTTGGCGTGGATCAGAGTGACTGAAGGGATGGGTGGGATCAAGCTGCTTAATGAAACAAAGACGCCGGGGCTGCTCAAGTGGGCTGAGAAGTTTGCTGCAGAGCCTGCTGTGAAAGATGTTCTGCCAGAGACACAGAAGCTTGCTGAATTTAGTAAGATTATTATAGCCAAATTAAGAGCTGCTGCCGCTGCTAAGGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

233

Amino Acids

25.56

Weight (kDa)

7.75

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	5.3e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 78	7.3e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	2.1e-11	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	98 - 200	3.7e-06	Glutathione S-transferase, C-terminal domain
GST_C_7	PF22041	118 - 174	5.4e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	125 - 193	2.4e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	453, 681
AclWI	GGATC	4 cut(s)	71, 260, 512, 539
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	2 cut(s)	86, 537
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	92
AfeI	AGCGCT	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 422
AhdI	GACNNNNNGTC	1 cut(s)	393
AluBI	AGCT	5 cut(s)	22, 130, 538, 634, 674
AluI	AGCT	5 cut(s)	22, 130, 538, 634, 674
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	101, 617
AlwI	GGATC	4 cut(s)	71, 260, 512, 539
AlwNI	CAGNNNCTG	2 cut(s)	294, 599
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	4 cut(s)	35, 237, 244, 690
ApeKI	GCWGC	8 cut(s)	299, 371, 538, 565, 590, 674, 677, 683
ApoI	RAATTY	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
Asp700I	GAANNNNTTC	2 cut(s)	320, 417
AspLEI	GCGC	3 cut(s)	279, 281, 403
AspS9I	GGNCC	2 cut(s)	237, 245
AsuC2I	CCSGG	3 cut(s)	149, 167, 561
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	8 cut(s)	286, 383, 525, 552, 577, 661, 664, 670
BccI	CCATC	4 cut(s)	200, 256, 361, 517
BcnI	CCSGG	3 cut(s)	149, 167, 561
BcoDI	GTCTC	2 cut(s)	101, 617
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	404
BisI	GCNGC	9 cut(s)	300, 372, 539, 566, 591, 675, 678, 681, 684
BlsI	GCNGC	9 cut(s)	301, 373, 540, 567, 592, 676, 679, 682, 685
Bme1390I	CCNGG	3 cut(s)	149, 167, 561
BmeRI	GACNNNNNGTC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	237, 245
BmiI	GGNNCC	2 cut(s)	117, 323
BmrFI	CCNGG	3 cut(s)	149, 167, 561
BmsI	GCATC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	2 cut(s)	336, 554
BpuMI	CCSGG	3 cut(s)	149, 167, 561
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	343, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	343, 560
BseGI	GGATG	3 cut(s)	339, 372, 528
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	117
BsePI	GCGCGC	1 cut(s)	277
BseXI	GCAGC	8 cut(s)	286, 383, 525, 552, 577, 661, 664, 670
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	4 cut(s)	37, 239, 246, 692
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	149, 167, 560
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	2 cut(s)	101, 617
BsnI	GGCC	4 cut(s)	37, 239, 246, 692
Bsp1286I	GDGCHC	2 cut(s)	61, 352
Bsp143I	GATC	5 cut(s)	63, 265, 457, 504, 531
BspACI	CCGC	2 cut(s)	453, 681
BspANI	GGCC	4 cut(s)	37, 239, 246, 692
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	117, 323
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	4 cut(s)	71, 260, 512, 539
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	343, 560
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	5 cut(s)	63, 265, 457, 504, 531
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	128, 279, 600, 636
BstDEI	CTNAG	3 cut(s)	6, 579, 687
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	339, 372, 528
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	3 cut(s)	279, 281, 403
BstKTI	GATC	5 cut(s)	66, 268, 460, 507, 534
BstMAI	GTCTC	2 cut(s)	101, 617
BstMBI	GATC	5 cut(s)	63, 265, 457, 504, 531
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 368, 565, 599, 680, 683, 689
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	3 cut(s)	147, 165, 559
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	8 cut(s)	286, 383, 525, 552, 577, 661, 664, 670
BsuRI	GGCC	4 cut(s)	37, 239, 246, 692
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	339, 372, 528
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	128, 279, 600, 636
CaiI	CAGNNNCTG	2 cut(s)	294, 599
CfoI	GCGC	3 cut(s)	279, 281, 403
Cfr13I	GGNCC	2 cut(s)	237, 245
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	6, 579, 687
DpnI	GATC	5 cut(s)	65, 267, 459, 506, 533
DpnII	GATC	5 cut(s)	63, 265, 457, 504, 531
DriI	GACNNNNNGTC	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	35
Eam1105I	GACNNNNNGTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	86, 537
Eco91I	GGTNACC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	36
FaiI	YATR	6 cut(s)	34, 156, 273, 306, 462, 659
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 431, 463
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	9 cut(s)	300, 372, 539, 566, 591, 675, 678, 681, 684
FokI	GGATG	3 cut(s)	326, 379, 535
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	9 cut(s)	300, 372, 539, 566, 591, 675, 678, 681, 684
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	3 cut(s)	278, 280, 402
GluI	GCNGC	9 cut(s)	300, 372, 539, 566, 591, 675, 678, 681, 684
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	4 cut(s)	37, 239, 246, 692
HapII	CCGG	3 cut(s)	149, 167, 560
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	3 cut(s)	279, 281, 403
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	3 cut(s)	277, 279, 401
HinP1I	GCGC	3 cut(s)	277, 279, 401
HindIII	AAGCTT	2 cut(s)	20, 632
HinfI	GANTC	3 cut(s)	40, 200, 291
HpaII	CCGG	3 cut(s)	149, 167, 560
Hpy188I	TCNGA	3 cut(s)	63, 265, 509
Hpy188III	TCNNGA	2 cut(s)	104, 353
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 386, 512
HpyCH4V	TGCA	2 cut(s)	482, 593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 368, 565, 599, 680, 683, 689
HpyF3I	CTNAG	3 cut(s)	6, 579, 687
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	3 cut(s)	277, 279, 401
Kzo9I	GATC	5 cut(s)	63, 265, 457, 504, 531
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	8 cut(s)	286, 383, 525, 552, 577, 661, 664, 670
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	385, 467, 511
MalI	GATC	5 cut(s)	65, 267, 459, 506, 533
MboI	GATC	5 cut(s)	63, 265, 457, 504, 531
MboII	GAAGA	2 cut(s)	92, 439
MhlI	GDGCHC	2 cut(s)	61, 352
MluCI	AATT	2 cut(s)	641, 665
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	5 cut(s)	48, 223, 250, 352, 403
MroXI	GAANNNNTTC	2 cut(s)	320, 417
MseI	TTAA	3 cut(s)	78, 543, 668
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	3 cut(s)	149, 167, 560
MspR9I	CCNGG	3 cut(s)	149, 167, 561
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	7 cut(s)	65, 368, 565, 599, 680, 683, 689
NciI	CCSGG	3 cut(s)	149, 167, 561
NdeII	GATC	5 cut(s)	63, 265, 457, 504, 531
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	117, 323
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	385, 511
PauI	GCGCGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	320, 417
PfeI	GAWTC	2 cut(s)	200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	9 cut(s)	301, 373, 540, 567, 592, 676, 679, 682, 685
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	117, 323
PspPI	GGNCC	2 cut(s)	237, 245
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	294, 599
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	78, 543, 668
SatI	GCNGC	9 cut(s)	300, 372, 539, 566, 591, 675, 678, 681, 684
Sau3AI	GATC	5 cut(s)	63, 265, 457, 504, 531
Sau96I	GGNCC	2 cut(s)	237, 245
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	149, 167, 561
SduI	GDGCHC	2 cut(s)	61, 352
SetI	ASST	8 cut(s)	24, 132, 262, 397, 474, 540, 636, 676
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	351, 569
SmoI	CTYRAG	2 cut(s)	351, 569
Sse9I	AATT	2 cut(s)	641, 665
SsiI	CCGC	2 cut(s)	453, 681
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	147, 165, 559
StyI	CCWWGG	1 cut(s)	343
TaqI	TCGA	2 cut(s)	87, 225
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	2 cut(s)	641, 665
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	2 cut(s)	200, 291
Tru1I	TTAA	3 cut(s)	78, 543, 668
Tru9I	TTAA	3 cut(s)	78, 543, 668
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	385, 511
TseI	GCWGC	8 cut(s)	299, 371, 538, 565, 590, 674, 677, 683
Tsp45I	GTSAC	2 cut(s)	385, 511
TspDTI	ATGAA	3 cut(s)	143, 347, 561
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	641
XmnI	GAANNNNTTC	2 cut(s)	320, 417
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.