Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

67539443 .. 67540292

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTAAGAATGATGTGAAGCTTCTAGGAGCATGGCCGAGCACATTTGTGTTGAGGGTTCGGATTGCCTTGAATGTCAAGTCTGTCGAGTACGAGTTTCTTCAGGAGACAATGGAACCCAAGAGCGAGCTTCTGCTCAAATCGAACCCGGTTCACAAGAAAATCCCGGTTCTGCTTCACAATGACAAACCCATCTGTGAATCTCTTATCATTGTGGAATACATCGACGAGGCTTGGGGCTCTGGCCCATCAATCCTACCTTCTGGTCCCTATGAGCGCGCTGTTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCCGCGATGAAAGGCATCGCTGCTGCTCAAGGTGATGAGGCAAAGAAGGCAGCAGTCGGGCAAGTGGCAGAAGGTCTAGAGCTGTTAGAGGATGCATTTCAAAAGATTAGCAAAGGAAAGAGTTTCTTTGGCGGAGATCACATTGACATTGGCTACCTTGACGTTGCACTTGGGGGACTTTTGGGTTGGCTGAGAGTGACTGAGGGGATGGCTGGGATCAAGCTGCTTAACGAAACGAAGACGCCGGGGCTGGTCAAGTACTCAAGTGGGCTGAGAAGTTTGCCAGAGACAGAAAAGCTTGCTGAAAGATGTTCTGCCAGAGACAGAAAAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

220

Amino Acids

24.2

Weight (kDa)

6.85

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	8.1e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 78	1.7e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	5.7e-11	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	2 cut(s)	279, 329
AciI	CCGC	2 cut(s)	327, 456
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	2 cut(s)	92, 584
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 425
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	6 cut(s)	22, 130, 406, 547, 622, 656
AluI	AGCT	6 cut(s)	22, 130, 406, 547, 622, 656
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	3 cut(s)	101, 605, 639
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	294
AoxI	GGCC	2 cut(s)	35, 244
ApeKI	GCWGC	5 cut(s)	299, 344, 347, 374, 547
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	279, 281
AspS9I	GGNCC	2 cut(s)	245, 266
AsuC2I	CCSGG	3 cut(s)	149, 167, 570
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	286, 331, 334, 386, 534
BccI	CCATC	3 cut(s)	200, 256, 526
BcnI	CCSGG	3 cut(s)	149, 167, 570
BcoDI	GTCTC	3 cut(s)	101, 605, 639
BfaI	CTAG	2 cut(s)	26, 401
BisI	GCNGC	5 cut(s)	300, 345, 348, 375, 548
BlsI	GCNGC	5 cut(s)	301, 346, 349, 376, 549
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	3 cut(s)	149, 167, 570
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	245, 266
BmiI	GGNNCC	3 cut(s)	117, 268, 323
BmrFI	CCNGG	3 cut(s)	149, 167, 570
BmsI	GCATC	2 cut(s)	348, 406
BpiI	GAAGAC	1 cut(s)	569
BpuEI	CTTGAG	2 cut(s)	336, 571
BpuMI	CCSGG	3 cut(s)	149, 167, 570
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	2 cut(s)	421, 537
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	506, 516, 587
BsePI	GCGCGC	1 cut(s)	277
BseXI	GCAGC	5 cut(s)	286, 331, 334, 386, 534
BseYI	CCCAGC	1 cut(s)	536
Bsh1236I	CGCG	2 cut(s)	279, 329
BshFI	GGCC	2 cut(s)	37, 246
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	149, 167, 569
BslFI	GGGAC	2 cut(s)	252, 513
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	3 cut(s)	101, 605, 639
BsmFI	GGGAC	2 cut(s)	252, 513
BsnI	GGCC	2 cut(s)	37, 246
Bsp1286I	GDGCHC	2 cut(s)	44, 242
Bsp143I	GATC	2 cut(s)	460, 540
BspACI	CCGC	2 cut(s)	327, 456
BspANI	GGCC	2 cut(s)	37, 246
BspCNI	CTCAG	3 cut(s)	507, 517, 588
BspFNI	CGCG	2 cut(s)	279, 329
BspLI	GGNNCC	3 cut(s)	117, 268, 323
BspPI	GGATC	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	569
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	2 cut(s)	460, 540
BssNI	GRCGYC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	128, 279, 624, 658
BstDEI	CTNAG	4 cut(s)	6, 515, 525, 596
BstF5I	GGATG	2 cut(s)	421, 537
BstFNI	CGCG	2 cut(s)	279, 329
BstHHI	GCGC	2 cut(s)	279, 281
BstKTI	GATC	2 cut(s)	463, 543
BstMAI	GTCTC	3 cut(s)	101, 605, 639
BstMBI	GATC	2 cut(s)	460, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	147, 165, 568
BstUI	CGCG	2 cut(s)	279, 329
BstV1I	GCAGC	5 cut(s)	286, 331, 334, 386, 534
BstV2I	GAAGAC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	37, 246
BtgZI	GCGATG	2 cut(s)	325, 344
BtsCI	GGATG	2 cut(s)	421, 537
Cac8I	GCNNGC	4 cut(s)	128, 279, 624, 658
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	279, 281
Cfr13I	GGNCC	2 cut(s)	245, 266
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	91, 583
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	2 cut(s)	91, 583
DdeI	CTNAG	4 cut(s)	6, 515, 525, 596
DpnI	GATC	2 cut(s)	462, 542
DpnII	GATC	2 cut(s)	460, 540
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 273, 306
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	252, 513
FatI	CATG	1 cut(s)	32
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	300, 345, 348, 375, 548
FokI	GGATG	2 cut(s)	428, 544
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	300, 345, 348, 375, 548
FspBI	CTAG	2 cut(s)	26, 401
GlaI	GCGC	2 cut(s)	278, 280
GluI	GCNGC	5 cut(s)	300, 345, 348, 375, 548
GsaI	CCCAGC	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	37, 246
HapII	CCGG	3 cut(s)	149, 167, 569
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	2 cut(s)	279, 281
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	277, 279
HinP1I	GCGC	2 cut(s)	277, 279
HindIII	AAGCTT	3 cut(s)	20, 620, 654
HinfI	GANTC	2 cut(s)	200, 291
HpaII	CCGG	3 cut(s)	149, 167, 569
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	104, 401
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 364, 389
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	419, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	4 cut(s)	6, 515, 525, 596
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	277, 279
Kzo9I	GATC	2 cut(s)	460, 540
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	5 cut(s)	286, 331, 334, 386, 534
LweI	GCATC	2 cut(s)	348, 406
MaeI	CTAG	2 cut(s)	26, 401
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	2 cut(s)	462, 542
MboI	GATC	2 cut(s)	460, 540
MboII	GAAGA	2 cut(s)	92, 574
MhlI	GDGCHC	2 cut(s)	44, 242
MnlI	CCTC	5 cut(s)	48, 223, 355, 406, 520
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	3 cut(s)	149, 167, 569
MspR9I	CCNGG	3 cut(s)	149, 167, 570
MvnI	CGCG	2 cut(s)	279, 329
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	3 cut(s)	149, 167, 570
NdeII	GATC	2 cut(s)	460, 540
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	3 cut(s)	117, 268, 323
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	421
OliI	CACNNNNGTG	1 cut(s)	47
PauI	GCGCGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	301, 346, 349, 376, 549
PspFI	CCCAGC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	117, 268, 323
PspPI	GGNCC	2 cut(s)	245, 266
PstNI	CAGNNNCTG	1 cut(s)	294
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	2 cut(s)	92, 584
RsaNI	GTAC	2 cut(s)	91, 583
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	5 cut(s)	300, 345, 348, 375, 548
Sau3AI	GATC	2 cut(s)	460, 540
Sau96I	GGNCC	2 cut(s)	245, 266
ScaI	AGTACT	1 cut(s)	584
ScrFI	CCNGG	3 cut(s)	149, 167, 570
SduI	GDGCHC	2 cut(s)	44, 242
SfaNI	GCATC	2 cut(s)	348, 406
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	351, 586
SmoI	CTYRAG	2 cut(s)	351, 586
SsiI	CCGC	2 cut(s)	327, 456
SspMI	CTAG	2 cut(s)	26, 401
StyD4I	CCNGG	3 cut(s)	147, 165, 568
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	87, 143, 225
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	2 cut(s)	200, 291
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	5 cut(s)	299, 344, 347, 374, 547
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	2 cut(s)	26, 401
ZrmI	AGTACT	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.