Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4552487 .. 4554499

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGAAGAGCAACGTGAAGGTTTTGGGAGCGTGGCCGAGCCCATACGTGATGAGGGCTCGGATCGAGCTCAATATCAAGTCAGTGGAGTATGAGTTTCTGGAGGAGACATTCGGATCCAAAAGCCAGCTTCTGCTCCAGTCCAATCCCGTCCACAAGAAAATCCCAGTTCTGATTCATGGCGACAAGCCCGTTTGTGAATCTCTCATCATTGTTGAGTACATCGACGAGGTTTGGTCCTCTGGCCCATCTATCCTCCCTTCTGACCCGTTCGATCGCGCTACTGCAAGATTCTGGGCTGCCTATATCGATGAGAAGTGGTTTCCCGCGATGAAAGGCATTGGTGCTGCTCAAGGAGATGATGAGGCAAAGATGGCAGCAATCGAGCAAGTGACAGGAGGGCTGGCGCTGCCGGGGGAAGCCTTTGAGAAATCCAGCAAAGGCAACGTCTATTTAGGCGGAGATGAGATCGGATACATGGACATTTCATTCGGTTGTTTCTTGGGGTGGCTCATTCTAAACGAGAAGCTGCATGGAACCGAACTGCTGGACCAAACGAAAACGCCGGGGCTGGTAAAATTGGCTGACAAGTTTTGTGCACATGCTGCTGGATGTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

208

Amino Acids

22.69

Weight (kDa)

5.15

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	279, 329
AciI	CCGC	2 cut(s)	327, 459
AclWI	GGATC	3 cut(s)	71, 111, 124
AcoI	YGGCCR	1 cut(s)	35
AfaI	GTAC	1 cut(s)	221
AluBI	AGCT	3 cut(s)	70, 130, 529
AluI	AGCT	3 cut(s)	70, 130, 529
Alw21I	GWGCWC	2 cut(s)	72, 601
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	71, 111, 124
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	35, 244
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	6 cut(s)	299, 347, 377, 409, 529, 605
ArsI	GACNNNNNNTTYG	4 cut(s)	432, 464, 473, 505
AspLEI	GCGC	2 cut(s)	281, 409
AspS9I	GGNCC	3 cut(s)	237, 245, 550
AsuC2I	CCSGG	2 cut(s)	414, 567
AvaII	GGWCC	2 cut(s)	237, 550
BaeGI	GKGCMC	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	116
BanII	GRGCYC	3 cut(s)	44, 61, 72
Bbv12I	GWGCWC	2 cut(s)	72, 601
BbvI	GCAGC	6 cut(s)	286, 334, 389, 396, 516, 592
BccI	CCATC	2 cut(s)	256, 367
BciVI	GTATCC	1 cut(s)	467
BcnI	CCSGG	2 cut(s)	414, 567
BcoDI	GTCTC	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	6 cut(s)	300, 348, 378, 410, 530, 606
BlsI	GCNGC	6 cut(s)	301, 349, 379, 411, 531, 607
Bme1390I	CCNGG	2 cut(s)	414, 567
Bme18I	GGWCC	2 cut(s)	237, 550
BmgT120I	GGNCC	3 cut(s)	237, 245, 550
BmiI	GGNNCC	2 cut(s)	118, 538
BmrFI	CCNGG	2 cut(s)	414, 567
BmrI	ACTGGG	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	122, 122
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	414, 567
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	413, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	2 cut(s)	139, 167
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	413, 566
BseGI	GGATG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	139, 167
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	6 cut(s)	286, 334, 389, 396, 516, 592
Bsh1236I	CGCG	2 cut(s)	279, 329
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	37, 246
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	72, 601
BsiSI	CCGG	2 cut(s)	413, 566
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	37, 246
Bsp1286I	GDGCHC	4 cut(s)	44, 61, 72, 601
Bsp143I	GATC	4 cut(s)	63, 116, 274, 468
BspACI	CCGC	2 cut(s)	327, 459
BspANI	GGCC	2 cut(s)	37, 246
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	279, 329
BspLI	GGNNCC	2 cut(s)	118, 538
BspPI	GGATC	3 cut(s)	71, 111, 124
BspQI	GCTCTTC	1 cut(s)	2
BsrI	ACTGG	2 cut(s)	139, 167
BssECI	CCNNGG	2 cut(s)	413, 566
BssMI	GATC	4 cut(s)	63, 116, 274, 468
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	128, 405
BstF5I	GGATG	1 cut(s)	617
BstFNI	CGCG	2 cut(s)	279, 329
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	281, 409
BstKTI	GATC	4 cut(s)	66, 119, 277, 471
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	63, 116, 274, 468
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 409, 605
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	412, 565
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	2 cut(s)	279, 329
BstV1I	GCAGC	6 cut(s)	286, 334, 389, 396, 516, 592
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	37, 246
BsuTUI	ATCGAT	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	128, 405
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	281, 409
Cfr13I	GGNCC	3 cut(s)	237, 245, 550
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	179, 478, 533, 602
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	4 cut(s)	65, 118, 276, 470
DpnII	GATC	4 cut(s)	63, 116, 274, 468
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	3 cut(s)	44, 61, 72
Eco47I	GGWCC	2 cut(s)	237, 550
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	3 cut(s)	44, 61, 72
FaeI	CATG	4 cut(s)	182, 481, 536, 605
FaiI	YATR	8 cut(s)	46, 93, 180, 306, 479, 534, 603, 618
FatI	CATG	4 cut(s)	178, 477, 532, 601
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	6 cut(s)	300, 348, 378, 410, 530, 606
FriOI	GRGCYC	3 cut(s)	44, 61, 72
Fsp4HI	GCNGC	6 cut(s)	300, 348, 378, 410, 530, 606
GlaI	GCGC	2 cut(s)	280, 408
GluI	GCNGC	6 cut(s)	300, 348, 378, 410, 530, 606
GsuI	CTGGAG	2 cut(s)	122, 122
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	37, 246
HapII	CCGG	2 cut(s)	413, 566
HhaI	GCGC	2 cut(s)	281, 409
Hin1II	CATG	4 cut(s)	182, 481, 536, 605
Hin6I	GCGC	2 cut(s)	279, 407
HinP1I	GCGC	2 cut(s)	279, 407
HinfI	GANTC	3 cut(s)	175, 200, 291
HpaII	CCGG	2 cut(s)	413, 566
Hpy166II	GTNNAC	2 cut(s)	154, 599
Hpy188I	TCNGA	5 cut(s)	63, 116, 174, 265, 473
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	154, 599
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	13, 270
HpyCH4IV	ACGT	3 cut(s)	15, 48, 447
HpyCH4V	TGCA	3 cut(s)	287, 532, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 409, 605
HpySE526I	ACGT	3 cut(s)	15, 48, 447
Hsp92II	CATG	4 cut(s)	182, 481, 536, 605
HspAI	GCGC	2 cut(s)	279, 407
Kzo9I	GATC	4 cut(s)	63, 116, 274, 468
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	29, 141
Lsp1109I	GCAGC	6 cut(s)	286, 334, 389, 396, 516, 592
MaeII	ACGT	3 cut(s)	15, 48, 447
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	4 cut(s)	65, 118, 276, 470
MboI	GATC	4 cut(s)	63, 116, 274, 468
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	4 cut(s)	44, 61, 72, 601
MluCI	AATT	1 cut(s)	578
MnlI	CCTC	7 cut(s)	48, 97, 223, 250, 266, 358, 392
MspI	CCGG	2 cut(s)	413, 566
MspR9I	CCNGG	2 cut(s)	414, 567
MvnI	CGCG	2 cut(s)	279, 329
MwoI	GCNNNNNNNGC	3 cut(s)	374, 409, 605
NciI	CCSGG	2 cut(s)	414, 567
NdeII	GATC	4 cut(s)	63, 116, 274, 468
NlaIII	CATG	4 cut(s)	182, 481, 536, 605
NlaIV	GGNNCC	2 cut(s)	118, 538
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	3 cut(s)	175, 200, 291
PkrI	GCNGC	6 cut(s)	301, 349, 379, 411, 531, 607
Ple19I	CGATCG	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	118, 538
PspPI	GGNCC	3 cut(s)	237, 245, 550
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	2
SatI	GCNGC	6 cut(s)	300, 348, 378, 410, 530, 606
Sau3AI	GATC	4 cut(s)	63, 116, 274, 468
Sau96I	GGNCC	3 cut(s)	237, 245, 550
ScrFI	CCNGG	2 cut(s)	414, 567
SduI	GDGCHC	4 cut(s)	44, 61, 72, 601
SetI	ASST	8 cut(s)	18, 24, 51, 72, 132, 234, 450, 531
SinI	GGWCC	2 cut(s)	237, 550
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	578
SsiI	CCGC	2 cut(s)	327, 459
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	412, 565
TaiI	ACGT	3 cut(s)	18, 51, 450
TaqI	TCGA	5 cut(s)	66, 225, 273, 309, 384
TasI	AATT	1 cut(s)	578
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	175, 200, 291
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	6 cut(s)	299, 347, 377, 409, 529, 605
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	167, 347, 477
TspRI	CASTG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	237, 550
XceI	RCATGY	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.