Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

40303913 .. 40304548

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGACATTAAGATCCAGGCTTCCAATTCGCTCCAACAAACAAGATTTCAAGAATGGATCGTCAACAACCAACGAATCAGGTCTCCCATTCGGGGTCAGGTTCCATCCTACAAACCACGAACTCCTCGATTACTATCTCCACACCAGGATCGCCATGGGTGACCACTTTCACTCCTATTTCATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAAGACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGCGCTTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCGGTCAGTATTGGAGAGAAGTTGTTGACCAGGAGGATGATGCTGTTGTTATTGGGCTCAAGAGGGAGTTCCGATACGAGGGTGGTTGTGATTCTCGTCACAACGAAGCTTGGTTGATGCAAGAGTACCAAATCATTGATGATGATTATGATATTGTACTGTGCACTTTGAGAAAGAACCCTAGAAAGGCACCACCAACCCCAACTGCTCAGGGAAGCAATGTTGTTGAAAAGACCAGAGTTAATGACAAAAAGAGAAAGAGCATTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

193

Amino Acids

22.46

Weight (kDa)

9.15

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	30 - 147	2e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	309
AciI	CCGC	4 cut(s)	192, 195, 267, 309
AclWI	GGATC	3 cut(s)	9, 67, 158
AfaI	GTAC	2 cut(s)	434, 465
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	94, 303, 385, 493
AgsI	TTSAA	2 cut(s)	52, 536
AjnI	CCWGG	3 cut(s)	17, 146, 336
AloI	GAACNNNNNNTCC	2 cut(s)	277, 309
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	9, 67, 158
Aor51HI	AGCGCT	1 cut(s)	275
ApaLI	GTGCAC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	173, 209, 232
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	2 cut(s)	114, 252
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	19, 148, 338
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	3 cut(s)	19, 148, 338
BmiI	GGNNCC	3 cut(s)	104, 295, 498
BmrFI	CCNGG	3 cut(s)	19, 148, 338
BmsI	GCATC	2 cut(s)	337, 414
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 303, 385, 493
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	19, 148, 338
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	106, 223, 349
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	4 cut(s)	94, 303, 385, 493
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	248, 530
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	4 cut(s)	94, 303, 385, 493
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	366, 473
Bsp143I	GATC	4 cut(s)	14, 59, 150, 280
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	4 cut(s)	192, 195, 267, 309
BspCNI	CTCAG	2 cut(s)	249, 529
BspLI	GGNNCC	3 cut(s)	104, 295, 498
BspPI	GGATC	3 cut(s)	9, 67, 158
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	4 cut(s)	14, 59, 150, 280
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	19, 148, 338
Bst4CI	ACNGT	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	257, 516
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	106, 223, 349
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	4 cut(s)	17, 62, 153, 283
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	14, 59, 150, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	3 cut(s)	19, 148, 338
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	17, 146, 336
BstSLI	GKGCMC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	106, 223, 349
CfoI	GCGC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	433, 464
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	4 cut(s)	22, 256, 364, 416
CviKI_1	RGCY	4 cut(s)	22, 256, 364, 416
CviQI	GTAC	2 cut(s)	433, 464
DdeI	CTNAG	2 cut(s)	257, 516
DpnI	GATC	4 cut(s)	16, 61, 152, 282
DpnII	GATC	4 cut(s)	14, 59, 150, 280
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	3 cut(s)	17, 146, 336
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	160
FaiI	YATR	2 cut(s)	158, 456
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	3 cut(s)	93, 230, 356
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	277
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	2 cut(s)	66, 334
HindII	GTYRAC	2 cut(s)	66, 334
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	5 cut(s)	77, 200, 226, 259, 398
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	3 cut(s)	173, 209, 232
Hpy166II	GTNNAC	3 cut(s)	66, 334, 471
Hpy188I	TCNGA	3 cut(s)	249, 285, 380
Hpy188III	TCNNGA	2 cut(s)	52, 367
Hpy8I	GTNNAC	3 cut(s)	66, 334, 471
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	427, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	257, 516
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	14, 59, 150, 280
LmnI	GCTCC	2 cut(s)	38, 306
LweI	GCATC	2 cut(s)	337, 414
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	161, 404
MalI	GATC	4 cut(s)	16, 61, 152, 282
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	4 cut(s)	14, 59, 150, 280
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	366, 473
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	3 cut(s)	209, 220, 268
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	137, 208, 334, 363, 379
MseI	TTAA	3 cut(s)	11, 549, 580
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	19, 148, 338
MvaI	CCWGG	3 cut(s)	19, 148, 338
MwoI	GCNNNNNNNGC	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	4 cut(s)	14, 59, 150, 280
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	104, 295, 498
NmuCI	GTSAC	2 cut(s)	161, 404
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	77, 398
PkrI	GCNGC	1 cut(s)	194
PleI	GAGTC	3 cut(s)	208, 220, 267
PpsI	GAGTC	3 cut(s)	208, 220, 267
Psp6I	CCWGG	3 cut(s)	17, 146, 336
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	3 cut(s)	17, 146, 336
PspN4I	GGNNCC	3 cut(s)	104, 295, 498
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	2 cut(s)	434, 465
RsaNI	GTAC	2 cut(s)	433, 464
SaqAI	TTAA	3 cut(s)	11, 549, 580
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	4 cut(s)	14, 59, 150, 280
SchI	GAGTC	3 cut(s)	209, 220, 268
ScrFI	CCNGG	3 cut(s)	19, 148, 338
SduI	GDGCHC	2 cut(s)	366, 473
SetI	ASST	3 cut(s)	85, 104, 418
SfaNI	GCATC	2 cut(s)	337, 414
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	192, 195, 267, 309
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	17, 146, 336
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	77, 398
Tru1I	TTAA	3 cut(s)	11, 549, 580
Tru9I	TTAA	3 cut(s)	11, 549, 580
TseFI	GTSAC	2 cut(s)	161, 404
Tsp45I	GTSAC	2 cut(s)	161, 404
TspDTI	ATGAA	2 cut(s)	172, 234
VneI	GTGCAC	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.