Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4692196 .. 4693096

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGCAACAGCGACGTCAAAGTTCTGGGAATGTGGCCGAGTCCGTTCGTGATGAGGGCTCGCATTGCCCTTAACCTCAAATCCGTCGACTACGAGTTTCTTCAGGAGACATTCGGATCTAAAAGCGAGCTTCTTCTTCAGTCCAATCCAGTCCACAAGAAAGTGCCAGTTCTCATTCATGGTGACAAACCAGTTTGTGAATCTCTCATCATTGTTGAGTACATTGACGAAGTTTGGGCATCTGGTCCGTCTATCCTCCCTTCTGACCCCTACGATCGCGCTACTGCACGATTTTGGGCTGCCTATATCAGCGAGAAGTGGTATCCATCCATGAAGGGCATTGGTTTTGCACAAGGAGAGGAGGCAAAGAAGGCAGCAATCGAACAAGTGACAGAAGGGCTGGCGCTGCTGGAGGAAGCCTTTGAGAAATCCAGCAAAGGCAACGTATTTTTCGGCGGAGATGAGATCGGATACTTGGACATTGCGTTCGGGTGCTTCTTGGGGTGGCTCAGAGTAAACGAGAAGCTGCATGGAATCAAACTGCTCGACCAAACGAAAACGCCGGGGCTGGTAAAATGGGCTGACAAGTTCTGTGCACATGCTGCTGTGAAGGATGTTATGCCTGAGACTGACAAGCTTGTTGAGATTGCTAAGATTCTTGCTGCCAAAGCAAGAGCTGCAGCCGCTCCTCCGTCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

234

Amino Acids

25.66

Weight (kDa)

5.88

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	456, 684
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	86, 122
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	221
AloI	GAACNNNNNNTCC	2 cut(s)	470, 502
AluBI	AGCT	4 cut(s)	130, 526, 637, 677
AluI	AGCT	4 cut(s)	130, 526, 637, 677
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	2 cut(s)	101, 620
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	8 cut(s)	299, 374, 406, 526, 602, 662, 677, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	2 cut(s)	281, 406
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	8 cut(s)	286, 386, 393, 513, 589, 649, 664, 692
BccI	CCATC	1 cut(s)	334
BciVI	GTATCC	2 cut(s)	333, 464
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	101, 620
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	407
BfuI	GTATCC	2 cut(s)	333, 464
BisI	GCNGC	9 cut(s)	300, 375, 407, 527, 603, 663, 678, 681, 684
BlsI	GCNGC	9 cut(s)	301, 376, 408, 528, 604, 664, 679, 682, 685
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	563
Bse1I	ACTGG	3 cut(s)	149, 167, 191
Bse3DI	GCAATG	2 cut(s)	63, 480
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	326, 619
BseMI	GCAATG	2 cut(s)	63, 480
BseMII	CTCAG	2 cut(s)	523, 615
BseNI	ACTGG	3 cut(s)	149, 167, 191
BseRI	GAGGAG	2 cut(s)	374, 678
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	8 cut(s)	286, 386, 393, 513, 589, 649, 664, 692
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	101, 620
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	61, 598
Bsp143I	GATC	3 cut(s)	116, 274, 465
BspACI	CCGC	2 cut(s)	456, 684
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	522, 616
BspFNI	CGCG	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	63, 480
BsrI	ACTGG	3 cut(s)	149, 167, 191
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	3 cut(s)	116, 274, 465
BssNI	GRCGYC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	2 cut(s)	602, 677
BstC8I	GCNNGC	3 cut(s)	61, 128, 402
BstDEI	CTNAG	3 cut(s)	509, 624, 651
BstF5I	GGATG	2 cut(s)	326, 619
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	281, 406
BstKTI	GATC	3 cut(s)	119, 277, 468
BstMAI	GTCTC	2 cut(s)	101, 620
BstMBI	GATC	3 cut(s)	116, 274, 465
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 371, 406, 602, 668, 677, 683
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	8 cut(s)	286, 386, 393, 513, 589, 649, 664, 692
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuI	GTATCC	2 cut(s)	333, 464
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	326, 619
Cac8I	GCNNGC	3 cut(s)	61, 128, 402
CfoI	GCGC	2 cut(s)	281, 406
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	179, 331, 530, 599
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	509, 624, 651
DpnI	GATC	3 cut(s)	118, 276, 467
DpnII	GATC	3 cut(s)	116, 274, 465
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	86, 122
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	4 cut(s)	182, 334, 533, 602
FaiI	YATR	6 cut(s)	180, 306, 332, 531, 600, 620
FatI	CATG	4 cut(s)	178, 330, 529, 598
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	9 cut(s)	300, 375, 407, 527, 603, 663, 678, 681, 684
FokI	GGATG	2 cut(s)	313, 626
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	9 cut(s)	300, 375, 407, 527, 603, 663, 678, 681, 684
GlaI	GCGC	2 cut(s)	280, 405
GluI	GCNGC	9 cut(s)	300, 375, 407, 527, 603, 663, 678, 681, 684
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	2 cut(s)	281, 406
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	182, 334, 533, 602
Hin6I	GCGC	2 cut(s)	279, 404
HinP1I	GCGC	2 cut(s)	279, 404
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	40, 200, 534, 655
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	4 cut(s)	88, 154, 517, 596
Hpy188I	TCNGA	4 cut(s)	116, 265, 470, 512
Hpy188III	TCNNGA	2 cut(s)	49, 104
Hpy8I	GTNNAC	4 cut(s)	88, 154, 517, 596
Hpy99I	CGWCG	2 cut(s)	17, 89
HpyAV	CCTTC	5 cut(s)	270, 328, 364, 389, 604
HpyCH4IV	ACGT	2 cut(s)	15, 444
HpyCH4V	TGCA	5 cut(s)	287, 350, 529, 596, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 371, 406, 602, 668, 677, 683
HpyF3I	CTNAG	3 cut(s)	509, 624, 651
HpySE526I	ACGT	2 cut(s)	15, 444
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	182, 334, 533, 602
HspAI	GCGC	2 cut(s)	279, 404
Kzo9I	GATC	3 cut(s)	116, 274, 465
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	8 cut(s)	286, 386, 393, 513, 589, 649, 664, 692
LweI	GCATC	1 cut(s)	248
MaeII	ACGT	2 cut(s)	15, 444
MaeIII	GTNAC	2 cut(s)	182, 388
MalI	GATC	3 cut(s)	118, 276, 467
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	3 cut(s)	116, 274, 465
MboII	GAAGA	3 cut(s)	92, 125, 128
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	61, 598
MluCI	AATT	1 cut(s)	697
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	7 cut(s)	48, 86, 266, 352, 355, 406, 699
MseI	TTAA	1 cut(s)	72
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	7 cut(s)	65, 371, 406, 602, 668, 677, 683
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	116, 274, 465
NlaIII	CATG	4 cut(s)	182, 334, 533, 602
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	182, 388
NspI	RCATGY	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	200, 534, 655
PkrI	GCNGC	9 cut(s)	301, 376, 408, 528, 604, 664, 679, 682, 685
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	9 cut(s)	300, 375, 407, 527, 603, 663, 678, 681, 684
Sau3AI	GATC	3 cut(s)	116, 274, 465
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	2 cut(s)	61, 598
SetI	ASST	7 cut(s)	18, 78, 132, 447, 528, 639, 679
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	697
SsiI	CCGC	2 cut(s)	456, 684
StyD4I	CCNGG	1 cut(s)	562
TaiI	ACGT	2 cut(s)	18, 447
TaqI	TCGA	3 cut(s)	87, 381, 546
TasI	AATT	1 cut(s)	697
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	3 cut(s)	200, 534, 655
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	182, 388
TseI	GCWGC	8 cut(s)	299, 374, 406, 526, 602, 662, 677, 680
Tsp45I	GTSAC	2 cut(s)	182, 388
TspDTI	ATGAA	2 cut(s)	167, 347
TspGWI	ACGGA	4 cut(s)	33, 73, 237, 681
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.