Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029476.1

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

3207 .. 3545

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029476.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggctaagaatgatgtgaagcttttaggagcatggccgagcccgtttgtgctgagggctcggatcgccttgaatgttaagtctgtcgagtacgagtttcttcaggagacaatggaacccaagagcgagcttctgctcaaatcgaacccggttcacaagaaaatcccggttctgcttcacaatgacaaacccgtctgtgagtctctcatcattgtggaatacatcgatgaggcttgggcctccggcccatctatcctaccttctgatccccatgagcgcgctgttgccagattctgggctgcttatactgatgagaaggtatgttttatacattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

112

Amino Acids

12.8

Weight (kDa)

6.06

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	279
AclWI	GGATC	2 cut(s)	71, 260
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	2 cut(s)	22, 130
AluI	AGCT	2 cut(s)	22, 130
Alw26I	GTCTC	2 cut(s)	101, 207
AlwI	GGATC	2 cut(s)	71, 260
AlwNI	CAGNNNCTG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	35, 237, 244
ApeKI	GCWGC	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	279, 281
AspS9I	GGNCC	2 cut(s)	237, 245
AsuC2I	CCSGG	2 cut(s)	149, 167
BanII	GRGCYC	2 cut(s)	44, 61
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	149, 167
BcoDI	GTCTC	2 cut(s)	101, 207
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	149, 167
BmgT120I	GGNCC	2 cut(s)	237, 245
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	149, 167
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	149, 167
Bsa29I	ATCGAT	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	44
BsePI	GCGCGC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	37, 239, 246
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	149, 167, 243
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	2 cut(s)	101, 207
BsnI	GGCC	3 cut(s)	37, 239, 246
Bsp1286I	GDGCHC	2 cut(s)	44, 61
Bsp143I	GATC	2 cut(s)	63, 265
BspANI	GGCC	3 cut(s)	37, 239, 246
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	71, 260
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	2 cut(s)	63, 265
BstC8I	GCNNGC	2 cut(s)	128, 279
BstDEI	CTNAG	2 cut(s)	6, 53
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	279, 281
BstKTI	GATC	2 cut(s)	66, 268
BstMAI	GTCTC	2 cut(s)	101, 207
BstMBI	GATC	2 cut(s)	63, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	147, 165
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	37, 239, 246
BsuTUI	ATCGAT	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	128, 279
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	279, 281
Cfr13I	GGNCC	2 cut(s)	237, 245
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	33, 272
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	6, 53
DpnI	GATC	2 cut(s)	65, 267
DpnII	GATC	2 cut(s)	63, 265
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	44, 61
Eco57I	CTGAAG	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	44, 61
FaeI	CATG	2 cut(s)	36, 275
FaiI	YATR	5 cut(s)	34, 273, 306, 322, 329
FatI	CATG	2 cut(s)	32, 271
Fnu4HI	GCNGC	1 cut(s)	300
FriOI	GRGCYC	2 cut(s)	44, 61
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	2 cut(s)	278, 280
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	37, 239, 246
HapII	CCGG	3 cut(s)	149, 167, 243
HhaI	GCGC	2 cut(s)	279, 281
Hin1II	CATG	2 cut(s)	36, 275
Hin6I	GCGC	2 cut(s)	277, 279
HinP1I	GCGC	2 cut(s)	277, 279
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	200, 291
HpaII	CCGG	3 cut(s)	149, 167, 243
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	63, 265
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	270, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	6, 53
Hsp92II	CATG	2 cut(s)	36, 275
HspAI	GCGC	2 cut(s)	277, 279
Kzo9I	GATC	2 cut(s)	63, 265
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	89, 162, 180, 256, 280, 301
Lsp1109I	GCAGC	1 cut(s)	286
MalI	GATC	2 cut(s)	65, 267
MboI	GATC	2 cut(s)	63, 265
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	44, 61
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	3 cut(s)	48, 223, 250
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	3 cut(s)	149, 167, 243
MspR9I	CCNGG	2 cut(s)	149, 167
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	2 cut(s)	149, 167
NdeII	GATC	2 cut(s)	63, 265
NlaIII	CATG	2 cut(s)	36, 275
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	63
PauI	GCGCGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	237, 245
PstNI	CAGNNNCTG	1 cut(s)	294
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	63, 265
Sau96I	GGNCC	2 cut(s)	237, 245
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	149, 167
SduI	GDGCHC	2 cut(s)	44, 61
SetI	ASST	4 cut(s)	24, 132, 262, 321
SmiMI	CAYNNNNRTG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	147, 165
TaqI	TCGA	3 cut(s)	87, 143, 225
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.