Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

66266678 .. 66267130

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG408500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTAAGAATGATGTGAAGCTTCTAGGAGCATGGCCGAGCACATTTGTGTTGAGGGTTCGGATTGCCTTGAATGTCAAGTCTGTCGAGTACGAGTTTCTTCAGGAGACAATGGAACCCAAGAGCGAGCTTCTGCTCAAATCGAACCCGGTTCACAAGAAAATCCCGGTTCTGCTTCACAATGACAAACCCATCAGTGAATCTCTTATCATTGTGGAATACATCGACGAGGCTTGGGCCTCTGGCCCATCAATCCTACCTTCTGGTCCCTATGAGCGCGCTGTTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCCGCGATGAAAGGCATCGCTGCTGCTCTAGTGCTGTTGGAGGATGCATTTCAAAAGATTAGCAAAGGAAAGAGTTTCTTTGGCGGAGATCACATTGGCTACCTTGACGTTGCACTTGGGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

150

Amino Acids

16.7

Weight (kDa)

5.94

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	1.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 78	5.5e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	6.4e-11	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	2 cut(s)	279, 329
AciI	CCGC	2 cut(s)	327, 408
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 377
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	22, 130
AluI	AGCT	2 cut(s)	22, 130
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	35, 237, 244
ApeKI	GCWGC	3 cut(s)	299, 344, 347
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	279, 281
AspS9I	GGNCC	3 cut(s)	237, 245, 266
AsuC2I	CCSGG	2 cut(s)	149, 167
AvaII	GGWCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	286, 331, 334
BccI	CCATC	2 cut(s)	200, 256
BcnI	CCSGG	2 cut(s)	149, 167
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	26, 353
BisI	GCNGC	3 cut(s)	300, 345, 348
BlsI	GCNGC	3 cut(s)	301, 346, 349
Bme1390I	CCNGG	2 cut(s)	149, 167
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	237, 245, 266
BmiI	GGNNCC	3 cut(s)	117, 268, 323
BmrFI	CCNGG	2 cut(s)	149, 167
BmsI	GCATC	2 cut(s)	348, 358
BpuMI	CCSGG	2 cut(s)	149, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	294
BsePI	GCGCGC	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	286, 331, 334
Bsh1236I	CGCG	2 cut(s)	279, 329
BshFI	GGCC	3 cut(s)	37, 239, 246
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	149, 167
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	37, 239, 246
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	327, 408
BspANI	GGCC	3 cut(s)	37, 239, 246
BspFNI	CGCG	2 cut(s)	279, 329
BspLI	GGNNCC	3 cut(s)	117, 268, 323
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	128, 279
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	2 cut(s)	279, 329
BstHHI	GCGC	2 cut(s)	279, 281
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	147, 165
BstUI	CGCG	2 cut(s)	279, 329
BstV1I	GCAGC	3 cut(s)	286, 331, 334
BsuRI	GGCC	3 cut(s)	37, 239, 246
BtgZI	GCGATG	2 cut(s)	325, 344
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	128, 279
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	279, 281
Cfr13I	GGNCC	3 cut(s)	237, 245, 266
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	9 cut(s)	5, 22, 37, 130, 233, 239, 246, 299, 423
CviKI_1	RGCY	9 cut(s)	5, 22, 37, 130, 233, 239, 246, 299, 423
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 273, 306
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	1 cut(s)	32
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	300, 345, 348
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	300, 345, 348
FspBI	CTAG	2 cut(s)	26, 353
GlaI	GCGC	2 cut(s)	278, 280
GluI	GCNGC	3 cut(s)	300, 345, 348
HaeIII	GGCC	3 cut(s)	37, 239, 246
HapII	CCGG	2 cut(s)	149, 167
HhaI	GCGC	2 cut(s)	279, 281
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	277, 279
HinP1I	GCGC	2 cut(s)	277, 279
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	200, 291
HpaII	CCGG	2 cut(s)	149, 167
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	2 cut(s)	371, 437
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	277, 279
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	89, 162, 180, 228, 249, 280, 301
Lsp1109I	GCAGC	3 cut(s)	286, 331, 334
LweI	GCATC	2 cut(s)	348, 358
MaeI	CTAG	2 cut(s)	26, 353
MaeII	ACGT	1 cut(s)	432
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	48, 223, 250, 358
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	149, 167
MspR9I	CCNGG	2 cut(s)	149, 167
MvnI	CGCG	2 cut(s)	279, 329
NciI	CCSGG	2 cut(s)	149, 167
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	3 cut(s)	117, 268, 323
NmeAIII	GCCGAG	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	47
PauI	GCGCGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	301, 346, 349
PspN4I	GGNNCC	3 cut(s)	117, 268, 323
PspPI	GGNCC	3 cut(s)	237, 245, 266
PstNI	CAGNNNCTG	1 cut(s)	294
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	300, 345, 348
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	3 cut(s)	237, 245, 266
ScrFI	CCNGG	2 cut(s)	149, 167
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	24, 132, 262, 429, 435
SfaNI	GCATC	2 cut(s)	348, 358
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	47
SsiI	CCGC	2 cut(s)	327, 408
SspMI	CTAG	2 cut(s)	26, 353
StyD4I	CCNGG	2 cut(s)	147, 165
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	87, 143, 225
TfiI	GAWTC	2 cut(s)	200, 291
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	3 cut(s)	299, 344, 347
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	2 cut(s)	26, 353
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.