Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

32848457 .. 32850294

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTAAGAATGATGTGAAGCTTATAGGAGCATGGCCGAGCCCATTTGTGTTGAGGGCTCGTATTGCCTTGAACGTCAAGTCTGTAGAGTACGAGTTTCTTCAGGAGACATTGGGAACCAAGAGTGAGCTTCTGCTCAAATCGAACCCTGTTCACAAGAAAATCCCTGTTCTGATTCATAATGACAAACCCATCTGTGAATCTCTTATCATTGTGGAGTACATCGACGAGGCTTGGGCCTCTGGCCCGTCCATCCTGCCTTCTGATCCCTACGACCGCGCCATTGCCAGATTCTGGGCTGCTTATATCGATGAGAAGTGGTTCCCGGCGATGAAAGGCATCGCTGCCGCTACAGATGACGAGGCGAGGGAAGGCAGCAGTGGGGCAAGTGGCAGAAGGTCTAGCGCTGTTGGAGGAAGCATTTCAAAAGATCAGCAAAGGAAAGAGTTTCTTTGGGGGAGATCACATTGGTTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

160

Amino Acids

17.72

Weight (kDa)

7.84

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	6.1e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 78	3.6e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	1.1e-11	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	277, 348
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	92, 221
AfeI	AGCGCT	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	73, 426
AluBI	AGCT	2 cut(s)	22, 130
AluI	AGCT	2 cut(s)	22, 130
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	294
Aor51HI	AGCGCT	1 cut(s)	406
AoxI	GGCC	3 cut(s)	35, 237, 244
ApeKI	GCWGC	3 cut(s)	299, 344, 375
Asp700I	GAANNNNTTC	2 cut(s)	320, 421
AspLEI	GCGC	2 cut(s)	281, 407
AspS9I	GGNCC	2 cut(s)	237, 245
AsuC2I	CCSGG	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	44, 61
BbvI	GCAGC	3 cut(s)	286, 331, 387
BccI	CCATC	2 cut(s)	200, 260
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	2 cut(s)	84, 351
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	4 cut(s)	300, 345, 348, 376
BlsI	GCNGC	4 cut(s)	301, 346, 349, 377
Bme1390I	CCNGG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	237, 245
BmiI	GGNNCC	2 cut(s)	118, 323
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	309
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	286, 331, 387
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	37, 239, 246
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	37, 239, 246
Bsp1286I	GDGCHC	2 cut(s)	44, 61
Bsp143I	GATC	3 cut(s)	265, 430, 461
BspACI	CCGC	2 cut(s)	277, 348
BspANI	GGCC	3 cut(s)	37, 239, 246
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	118, 323
BspPI	GGATC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	282
BssMI	GATC	3 cut(s)	265, 430, 461
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	281, 407
BstKTI	GATC	3 cut(s)	268, 433, 464
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	265, 430, 461
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	2 cut(s)	84, 351
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	286, 331, 387
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	37, 239, 246
BsuTUI	ATCGAT	1 cut(s)	309
BtgZI	GCGATG	2 cut(s)	325, 344
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	281, 407
Cfr13I	GGNCC	2 cut(s)	237, 245
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	91, 220
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	2 cut(s)	91, 220
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	267, 432, 463
DpnII	GATC	3 cut(s)	265, 430, 461
EaeI	YGGCCR	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	44, 61
Eco47III	AGCGCT	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	471
EcoO65I	GGTNACC	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	44, 61
FaeI	CATG	1 cut(s)	36
FaiI	YATR	4 cut(s)	26, 34, 180, 306
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	300, 345, 348, 376
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	44, 61
Fsp4HI	GCNGC	4 cut(s)	300, 345, 348, 376
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	2 cut(s)	280, 406
GluI	GCNGC	4 cut(s)	300, 345, 348, 376
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	37, 239, 246
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	2 cut(s)	281, 407
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	279, 405
HinP1I	GCGC	2 cut(s)	279, 405
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	175, 200, 291
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	174, 265
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 365, 390
HpyCH4IV	ACGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	279, 405
Kzo9I	GATC	3 cut(s)	265, 430, 461
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	89, 162, 180, 228, 269, 280, 301, 339
Lsp1109I	GCAGC	3 cut(s)	286, 331, 387
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	3 cut(s)	267, 432, 463
MboI	GATC	3 cut(s)	265, 430, 461
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	44, 61
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	48, 223, 250, 355, 360, 407
MroXI	GAANNNNTTC	2 cut(s)	320, 421
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	3 cut(s)	265, 430, 461
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	118, 323
NmeAIII	GCCGAG	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	320, 421
PfeI	GAWTC	3 cut(s)	175, 200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	301, 346, 349, 377
PspEI	GGTNACC	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	118, 323
PspPI	GGNCC	2 cut(s)	237, 245
PstNI	CAGNNNCTG	1 cut(s)	294
RsaI	GTAC	2 cut(s)	92, 221
RsaNI	GTAC	2 cut(s)	91, 220
SatI	GCNGC	4 cut(s)	300, 345, 348, 376
Sau3AI	GATC	3 cut(s)	265, 430, 461
Sau96I	GGNCC	2 cut(s)	237, 245
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	44, 61
SetI	ASST	5 cut(s)	24, 78, 132, 401, 478
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	2 cut(s)	84, 351
SsiI	CCGC	2 cut(s)	277, 348
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	324
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	143, 225, 309
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	175, 200, 291
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	3 cut(s)	299, 344, 375
TspDTI	ATGAA	2 cut(s)	167, 347
TspRI	CASTG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	294
XmnI	GAANNNNTTC	2 cut(s)	320, 421
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.