Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Reverse (-)

66201966 .. 66203094

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTAAGAATGATGTGAAGCTTTTAGGAGCATGGCCGAGCCCATTTGTGTTGAGGGCTCGGATTGCCCTGAATGTCAAGTCTGTCGAGTACGAGTTTCTTCAGGAGACAATGGAACCCAAGAGCGAGCTTCTGCTCAAATCGAACCCGGTACACAAGAAAATCCCGGTTCTGCTTCACAATGACAAACCCATCTGTGAATCTCTTATCATTGTGGAATACATCGACGAGGCTTGGGCCTCTGGCCCATCAATCCTACCTTCTGGTCCCTATGAGCGCGCTGTTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCCGCGATGAAAGGCATCGCTGCTGCTCAAGGTGATGAGGCAAAGAAGGCAGCAGTCGGGCAAGTGGCAGAAGGTCTAGTGCTGTTGGAGGATGCGTTTCAAGAGATTAGCAAAGGAAAGAGTTTCTTTGGCGGAGATCACATTGGCTACCTTGACATTGCATTTGGGGGACTTTTGGGTTGGCTGAGAGTGACCGAGGGGATGGCTGGGATCAAGCTGCTTAACGAAACAAAGACGCCGGGGCTGGTCAAGTGGGCTGACAAGTTTGCTGCGGATCCTGCTGTGAAAGATGTTCTGCCAGAGACAGAGAAGCTTGCTGAGTTTAGTAAGTTTATTGTAGCCAAATTAAGAGCTGCTGCAGCTGCTGGGGCTAACGATTATGTTGGTTTTGAACAAGTATCGAAGCTTGCTTCACATATTAGTGAGGGTAGAAAGTTGCACCAAACTACTGGAAAAGGGGCCAAAGGACAGAGTAGGGAGGCACGGATGACAGATGAGCATCCAGTCAATACACACCCAAAAACTGTGCCTCTCAAAATTTTAGGCACAGATGAATTATTTCCATTGCAAGTGGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

302

Amino Acids

32.87

Weight (kDa)

7.07

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 77	5.1e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 78	1.1e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	2.4e-11	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	98 - 201	1e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	2 cut(s)	279, 329
AciI	CCGC	3 cut(s)	327, 456, 596
AclWI	GGATC	3 cut(s)	542, 593, 606
AcoI	YGGCCR	2 cut(s)	35, 897
AcsI	RAATTY	1 cut(s)	861
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	92, 153
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	425, 716
AluBI	AGCT	7 cut(s)	22, 130, 541, 637, 677, 686, 730
AluI	AGCT	7 cut(s)	22, 130, 541, 637, 677, 686, 730
Alw26I	GTCTC	2 cut(s)	101, 620
AlwI	GGATC	3 cut(s)	542, 593, 606
AlwNI	CAGNNNCTG	2 cut(s)	294, 689
AoxI	GGCC	5 cut(s)	35, 237, 244, 783, 897
ApoI	RAATTY	1 cut(s)	861
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp700I	GAANNNNTTC	2 cut(s)	320, 882
AspLEI	GCGC	2 cut(s)	279, 281
AspS9I	GGNCC	4 cut(s)	237, 245, 266, 783
AsuC2I	CCSGG	3 cut(s)	149, 167, 564
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	899
BamHI	GGATCC	1 cut(s)	598
BanII	GRGCYC	2 cut(s)	44, 61
BccI	CCATC	3 cut(s)	200, 256, 520
BcnI	CCSGG	3 cut(s)	149, 167, 564
BcoDI	GTCTC	2 cut(s)	101, 620
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	681
Bme1390I	CCNGG	3 cut(s)	149, 167, 564
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	4 cut(s)	237, 245, 266, 783
BmiI	GGNNCC	5 cut(s)	117, 268, 323, 600, 784
BmrFI	CCNGG	3 cut(s)	149, 167, 564
BmsI	GCATC	3 cut(s)	348, 406, 832
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	3 cut(s)	149, 167, 564
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	519, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	778, 827
Bse3DI	GCAATG	2 cut(s)	480, 887
Bse8I	GATNNNNATC	1 cut(s)	822
BseDI	CCNNGG	2 cut(s)	519, 563
BseGI	GGATG	4 cut(s)	421, 531, 816, 823
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	480, 887
BseMII	CTCAG	2 cut(s)	500, 633
BseNI	ACTGG	2 cut(s)	778, 827
BsePI	GCGCGC	1 cut(s)	277
BseYI	CCCAGC	2 cut(s)	530, 689
Bsh1236I	CGCG	2 cut(s)	279, 329
BshFI	GGCC	5 cut(s)	37, 239, 246, 785, 899
BsiSI	CCGG	3 cut(s)	149, 167, 563
BslFI	GGGAC	2 cut(s)	252, 507
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	2 cut(s)	101, 620
BsmFI	GGGAC	2 cut(s)	252, 507
BsnI	GGCC	5 cut(s)	37, 239, 246, 785, 899
Bsp1286I	GDGCHC	2 cut(s)	44, 61
Bsp143I	GATC	3 cut(s)	460, 534, 598
BspACI	CCGC	3 cut(s)	327, 456, 596
BspANI	GGCC	5 cut(s)	37, 239, 246, 785, 899
BspCNI	CTCAG	2 cut(s)	501, 634
BspFNI	CGCG	2 cut(s)	279, 329
BspLI	GGNNCC	5 cut(s)	117, 268, 323, 600, 784
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	3 cut(s)	542, 593, 606
BsrDI	GCAATG	2 cut(s)	480, 887
BsrI	ACTGG	2 cut(s)	778, 827
BssECI	CCNNGG	2 cut(s)	519, 563
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	3 cut(s)	460, 534, 598
BssNI	GRCGYC	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	850
BstACI	GRCGYC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	128, 279, 639, 732
BstDEI	CTNAG	3 cut(s)	6, 509, 642
BstF5I	GGATG	4 cut(s)	421, 531, 816, 823
BstFNI	CGCG	2 cut(s)	279, 329
BstHHI	GCGC	2 cut(s)	279, 281
BstKTI	GATC	3 cut(s)	463, 537, 601
BstMAI	GTCTC	2 cut(s)	101, 620
BstMBI	GATC	3 cut(s)	460, 534, 598
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 371, 602, 683, 686, 692
BstSCI	CCNGG	3 cut(s)	147, 165, 562
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	2 cut(s)	279, 329
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	5 cut(s)	37, 239, 246, 785, 899
BtgZI	GCGATG	2 cut(s)	325, 344
BtsCI	GGATG	4 cut(s)	421, 531, 816, 823
Cac8I	GCNNGC	4 cut(s)	128, 279, 639, 732
CaiI	CAGNNNCTG	2 cut(s)	294, 689
CfoI	GCGC	2 cut(s)	279, 281
Cfr13I	GGNCC	4 cut(s)	237, 245, 266, 783
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	91, 152
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	2 cut(s)	91, 152
DdeI	CTNAG	3 cut(s)	6, 509, 642
DpnI	GATC	3 cut(s)	462, 536, 600
DpnII	GATC	3 cut(s)	460, 534, 598
EaeI	YGGCCR	2 cut(s)	35, 897
EciI	GGCGGA	1 cut(s)	471
Eco24I	GRGCYC	2 cut(s)	44, 61
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	44, 61
FaeI	CATG	1 cut(s)	36
FaiI	YATR	5 cut(s)	34, 273, 306, 705, 741
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	252, 507
FatI	CATG	1 cut(s)	32
FauI	CCCGC	1 cut(s)	334
FokI	GGATG	4 cut(s)	428, 538, 810, 823
FriOI	GRGCYC	2 cut(s)	44, 61
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	278, 280
GsaI	CCCAGC	2 cut(s)	534, 693
HaeIII	GGCC	5 cut(s)	37, 239, 246, 785, 899
HapII	CCGG	3 cut(s)	149, 167, 563
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	279, 281
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	277, 279
HinP1I	GCGC	2 cut(s)	277, 279
HindIII	AAGCTT	3 cut(s)	20, 635, 728
HinfI	GANTC	2 cut(s)	200, 291
HpaII	CCGG	3 cut(s)	149, 167, 563
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	104, 425
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	270, 364, 389
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4V	TGCA	4 cut(s)	485, 683, 763, 892
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 371, 602, 683, 686, 692
HpyF3I	CTNAG	3 cut(s)	6, 509, 642
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	277, 279
Kzo9I	GATC	3 cut(s)	460, 534, 598
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	3 cut(s)	348, 406, 832
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	462, 536, 600
MboI	GATC	3 cut(s)	460, 534, 598
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	44, 61
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	3 cut(s)	668, 861, 878
MluNI	TGGCCA	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	48, 223, 250, 355, 406, 514, 742, 796, 864
Mox20I	TGGCCA	1 cut(s)	899
MroXI	GAANNNNTTC	2 cut(s)	320, 882
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	2 cut(s)	546, 671
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	3 cut(s)	149, 167, 563
MspR9I	CCNGG	3 cut(s)	149, 167, 564
MvnI	CGCG	2 cut(s)	279, 329
MwoI	GCNNNNNNNGC	6 cut(s)	65, 371, 602, 683, 686, 692
NciI	CCSGG	3 cut(s)	149, 167, 564
NdeII	GATC	3 cut(s)	460, 534, 598
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	5 cut(s)	117, 268, 323, 600, 784
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	514
PauI	GCGCGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	320, 882
PfeI	GAWTC	2 cut(s)	200, 291
PflMI	CCANNNNNTGG	1 cut(s)	294
PspFI	CCCAGC	2 cut(s)	530, 689
PspN4I	GGNNCC	5 cut(s)	117, 268, 323, 600, 784
PspPI	GGNCC	4 cut(s)	237, 245, 266, 783
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	2 cut(s)	294, 689
PsuI	RGATCY	1 cut(s)	598
PteI	GCGCGC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	92, 153
RsaNI	GTAC	2 cut(s)	91, 152
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	546, 671
Sau3AI	GATC	3 cut(s)	460, 534, 598
Sau96I	GGNCC	4 cut(s)	237, 245, 266, 783
ScrFI	CCNGG	3 cut(s)	149, 167, 564
SduI	GDGCHC	2 cut(s)	44, 61
SfaNI	GCATC	3 cut(s)	348, 406, 832
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	668, 861, 878
SsiI	CCGC	3 cut(s)	327, 456, 596
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	147, 165, 562
TaaI	ACNGT	1 cut(s)	850
TaqI	TCGA	4 cut(s)	87, 143, 225, 725
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	3 cut(s)	668, 861, 878
TfiI	GAWTC	2 cut(s)	200, 291
Tru1I	TTAA	2 cut(s)	546, 671
Tru9I	TTAA	2 cut(s)	546, 671
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	347, 891
TspGWI	ACGGA	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	861
XmnI	GAANNNNTTC	2 cut(s)	320, 882
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.