Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192854.1

Orthogroup ID

OG0004653

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 552

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192854.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaacccaagagcgagcttctgctcaaatcgaacccggttcacaagaaaatcccggttctgcttcacaatgacaaacccatctgtgaatctcttatcattgtggaatacatcgacgaggcttggggctctggcccatcaatcctaccttctggtccctatgagcgcgctgttgccagattctgggctgcttatattgatgagaagtggttccccgcgatgaaaggcatcgctgctgctcaaggtgatgaggcaaagaaggcagcagtcgggcaagtggcagaaggtctagagctgttagaggatgcatttcaaaagattagcaaaggaaagagtttctttggcggagatcacattgacattggctaccttgacgttgcacttgggggacttttgggttggctgagagtgactgaggggatggctgggatcaagctgcttaacgaaacgaagacgccggggctggtcaagtactcaagtgggctgagaagtttgccagagacagaaaagcttgctgaaagatgttctgccagagacagaaaagcttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009404 GO:0009407 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009719 GO:0009725 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0016740 GO:0016765 GO:0019748 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051186 GO:0060416 GO:0065007 GO:0071704 GO:0080134 GO:0080148 GO:0080167 GO:0090696 GO:0098754 GO:0099402 GO:1901564 GO:1901652 GO:1901698 GO:1901700 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

183

Amino Acids

19.95

Weight (kDa)

6.33

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10360 AT1G10370
fragaria_vesca	FvH4_4g35560 FvH4_4g35600
malus_domestica	MD13G1081900.v1.1 MD13G1082000.v1.1 MD13G1082100.v1.1 MD13G1082200.v1.1 MD16G1081100.v1.1
prunus_persica	Prupe.1G264700_v2.0.a1 Prupe.1G264900_v2.0.a1
pyrus_communis	pycom13g07080 pycom16g07010
rosa_chinensis	RchiOBHm_Chr4g0445201 RchiOBHm_Chr5g0060741
rosa_laevigata	RLG00000005757 RLG00000035391
rosa_multiflora	Rmu_co8192854.1_g000001 Rmu_sc0000050.1_g000034 Rmu_sc0006568.1_g000003 Rmu_sc0029476.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385720
rosa_rugosa	Rorug04G0360000 Rorug05G0333500
rosa_samantha	Rh4AG420800 Rh4BG432700 Rh4CG447400 Rh4DG428800 Rh5BG408500 Rh5DG423700
rosa_wichuraiana	Rw4G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccII	CGCG	2 cut(s)	168, 218
AciI	CCGC	2 cut(s)	216, 345
AclWI	GGATC	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	5 cut(s)	19, 295, 436, 511, 545
AluI	AGCT	5 cut(s)	19, 295, 436, 511, 545
Alw26I	GTCTC	2 cut(s)	494, 528
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	5 cut(s)	188, 233, 236, 263, 436
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	168, 170
AspS9I	GGNCC	2 cut(s)	134, 155
AsuC2I	CCSGG	3 cut(s)	38, 56, 459
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	5 cut(s)	175, 220, 223, 275, 423
BccI	CCATC	3 cut(s)	89, 145, 415
BcnI	CCSGG	3 cut(s)	38, 56, 459
BcoDI	GTCTC	2 cut(s)	494, 528
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	5 cut(s)	189, 234, 237, 264, 437
BlsI	GCNGC	5 cut(s)	190, 235, 238, 265, 438
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	3 cut(s)	38, 56, 459
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	134, 155
BmiI	GGNNCC	3 cut(s)	6, 157, 212
BmrFI	CCNGG	3 cut(s)	38, 56, 459
BmsI	GCATC	2 cut(s)	237, 295
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	225, 460
BpuMI	CCSGG	3 cut(s)	38, 56, 459
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	2 cut(s)	310, 426
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	395, 405, 476
BsePI	GCGCGC	1 cut(s)	166
BseXI	GCAGC	5 cut(s)	175, 220, 223, 275, 423
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	168, 218
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	38, 56, 458
BslFI	GGGAC	2 cut(s)	141, 402
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	494, 528
BsmFI	GGGAC	2 cut(s)	141, 402
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	349, 429
BspACI	CCGC	2 cut(s)	216, 345
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	396, 406, 477
BspFNI	CGCG	2 cut(s)	168, 218
BspLI	GGNNCC	3 cut(s)	6, 157, 212
BspPI	GGATC	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	458
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	2 cut(s)	349, 429
BssNI	GRCGYC	1 cut(s)	455
BstACI	GRCGYC	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	17, 168, 513, 547
BstDEI	CTNAG	3 cut(s)	404, 414, 485
BstF5I	GGATG	2 cut(s)	310, 426
BstFNI	CGCG	2 cut(s)	168, 218
BstHHI	GCGC	2 cut(s)	168, 170
BstKTI	GATC	2 cut(s)	352, 432
BstMAI	GTCTC	2 cut(s)	494, 528
BstMBI	GATC	2 cut(s)	349, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	36, 54, 457
BstUI	CGCG	2 cut(s)	168, 218
BstV1I	GCAGC	5 cut(s)	175, 220, 223, 275, 423
BstV2I	GAAGAC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	2 cut(s)	214, 233
BtsCI	GGATG	2 cut(s)	310, 426
Cac8I	GCNNGC	4 cut(s)	17, 168, 513, 547
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	2 cut(s)	168, 170
Cfr13I	GGNCC	2 cut(s)	134, 155
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	472
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	404, 414, 485
DpnI	GATC	2 cut(s)	351, 431
DpnII	GATC	2 cut(s)	349, 429
EciI	GGCGGA	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	131
FaiI	YATR	2 cut(s)	162, 195
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	2 cut(s)	141, 402
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	189, 234, 237, 264, 437
FokI	GGATG	2 cut(s)	317, 433
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	5 cut(s)	189, 234, 237, 264, 437
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	167, 169
GluI	GCNGC	5 cut(s)	189, 234, 237, 264, 437
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	38, 56, 458
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	168, 170
Hin1I	GRCGYC	1 cut(s)	455
Hin6I	GCGC	2 cut(s)	166, 168
HinP1I	GCGC	2 cut(s)	166, 168
HindIII	AAGCTT	2 cut(s)	509, 543
HinfI	GANTC	2 cut(s)	89, 180
HpaII	CCGG	3 cut(s)	38, 56, 458
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	159, 253, 278
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	308, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	404, 414, 485
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	455
HspAI	GCGC	2 cut(s)	166, 168
Kzo9I	GATC	2 cut(s)	349, 429
Lsp1109I	GCAGC	5 cut(s)	175, 220, 223, 275, 423
LweI	GCATC	2 cut(s)	237, 295
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	351, 431
MboI	GATC	2 cut(s)	349, 429
MboII	GAAGA	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	112, 244, 295, 409
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	441
MspI	CCGG	3 cut(s)	38, 56, 458
MspR9I	CCNGG	3 cut(s)	38, 56, 459
MvnI	CGCG	2 cut(s)	168, 218
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	3 cut(s)	38, 56, 459
NdeII	GATC	2 cut(s)	349, 429
NlaIV	GGNNCC	3 cut(s)	6, 157, 212
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	310
PauI	GCGCGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	89, 180
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	5 cut(s)	190, 235, 238, 265, 438
PspFI	CCCAGC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	6, 157, 212
PspPI	GGNCC	2 cut(s)	134, 155
PstNI	CAGNNNCTG	1 cut(s)	183
PteI	GCGCGC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	5 cut(s)	189, 234, 237, 264, 437
Sau3AI	GATC	2 cut(s)	349, 429
Sau96I	GGNCC	2 cut(s)	134, 155
ScaI	AGTACT	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	38, 56, 459
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	2 cut(s)	237, 295
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	240, 475
SmoI	CTYRAG	2 cut(s)	240, 475
SsiI	CCGC	2 cut(s)	216, 345
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	36, 54, 457
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	32, 114
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	89, 180
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	5 cut(s)	188, 233, 236, 263, 436
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.