Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Forward (+)

33255641 .. 33260356

Gene Structure 4716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36230.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGAGAAAACCCATATCGAAAACAACGCGGAAGCAAAAGCTGCTATCAGAGGTCGAAGAAATCAAGCTCCTCAATTCATGGATCGAATCCCAGAAACCCGACTGCGGCTCCAACCCAATGTCCCTCCCGCCTCTCCCCTCCAACGCCCCCATCGGGCGCGTGGACCCCACGTCCTTCTCCCGCTACGCCGGCGCCACCAGGTTCGCCGAGCTCCCCGTCTCCAAGAAGACCAAGGACGCCTTGCGGCAGTCCAGGTACACCGACATGACCGATATCCAGCGCGCGTGTTTGCCACACGCGCTCTGCGGAAGGGACATTCTGGGCGCCGCCAAGACCGGCTCCGGCAAGACTCTGGCTTTTGTGATTCCGCTCTTGGAAAAATTGTATAAAGAGAGATGGAATCCTGAGGATGGGGTAGGCAGCATTATTATATCTCCGACAAGAGAACTAGCTAGTCAGACGTTTGATGTGTTAAGAGCAGTTGGAAAGCACCATAATTTTAGTGCTGGCCTCCTAATTGGTGGTCGGAAAGATGTTGAAGCGGAGAAGGAGCGCGTAAATGAATTGAACATACTGGTTTGCACTCCTGGACGACTTCTACAACACATGGACGAGACGCCAAATTTTGAGTGTTCACAGCTACAGGTTTTGGTTCTTGATGAGGCAGATCGTATTCTTGACGTGGGATTTAAGAAGGCATTGAACGCCATCATTTCACAGCTACCTAAGAGAAGACAAACCTTTCTCTTCTCTGCAACTCAAACAAAGTCAGTTCAAGATCTCGCAAGACTTAGTTTGAAGGACCCAGAATACCTTAGTGTGCACGAGAAGGCTACAAGAGCCACTCCAAATCGTTTGAAGCAAACTGCAATGATTGTTCCTCTTGATAAAAAATTAGATATGCTGTGGAGCTTCATAAAGGCACATCTGAATTCTAGGATTCTAGTGTTCTTATCGACACGTAAACAGGTAAAATTTGTCTATGAAGCATTTAAGAAGCTCCGACCTGGAATACCCCTGAAGTGTCTTCATGGTAAGATGAAGCAAGAGGGAAGAATGGGCACATACTCGCAGTTTCATGAAAAAGCTACAGTTCTTTTCTCGACTGATGTAGCTTCGAGAGGCCTTGATTTCAACCAGGCAGTTGATTGGGTTGTTCAGGTGGATTGTCCAGAAGATGTTGCATCCTATATACACAGAGTTGGCCGAACTGCACGCTATCAATCCGAAGGGCGATCACTTTTATTTGTGATGCCCTCAGAAACAAAAATGCTTGAGAAGTTAGATGCCGCAAAAATACCCATAGATTGCATCAAGGCTAACAACAAGAGACTGCAACCTGTAAGTGGGTTGCTGTCAGCTTTGCTAGTCAAGTACCCTGACACACTTCCAGGTCTGGCCAAAAGGGCTTTTATCACGTATTTAAAGTCTATTCAAAACCACAAGGACAAAGAAGTTTTTGACGTGATGCAACTGCCAGTTGATGAGTTTTCCGCATCAATGGGTTTACCAATGACCCCCAAGATCCGTTTTTCAAACCATAAAATGAAATCCAAGAAACCTTTGGAACTGTCTCCCATTGTTGAACCAGAAAGTTCTGAGATGGAGAATGCATTAGAGACTCCTAGAGAGGAGCTTGATATTGGTGATGGGGACGAAGAGGAAGTGGAGGAAGGTCTTCTTCGAATAAATGATATACCAACTGAGAGAGAGGGGGAAAGAAGACAGATTGCAGATATTATGCCGGCAACTCGGGTTTCGAAGAAAAAGAAGTTGAAGATCAACTTGGATAAACCTACGGGAACTAGGGGGGTCTTTGATGAGAACGGCAATTTGGTGGACCCACTTGCAAGGTTGGCTGCTCCCAGTGATCCCAGCATTCTTGATGGACTTCAAGACAAGAAAGAAGAATTTCATAAGAGGCTTAGGGAAGAGGTGAAGAAGACAGACAAGCAAGACAAGGAAAAAGACCGCCAGCGTCGTCGTGAAAAAAGAATGAAGGAGAAGATGAAGCTGAAGAGAGCAAATGCAGAAGAAGAGGACGACGATGAATCTGAGTCAGAAGAAGAGCCATCTGATAAGCGATCGCACAAAAGGTCAAAGATATACTTTGATAGTGATGATGATGGTGAGAGAGAAGAGAAGAAGGATAAAGCTGGGTTTGTTGCTGACTCAAGTTATATAGAGCATCAGCAAGCTTTGGCTCTCAAACTGTTAGATTCAATGCATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

745

Amino Acids

84.48

Weight (kDa)

8.95

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	90 - 261	5.1e-45	DEAD/DEAH box helicase
ResIII	PF04851	109 - 253	1.9e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	298 - 407	6e-24	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	466 - 509	1.1e-10	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	191, 323
AccBSI	CCGCTC	1 cut(s)	370
AccII	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
AclWI	GGATC	3 cut(s)	89, 1519, 1865
AcoI	YGGCCR	2 cut(s)	1204, 1398
AcsI	RAATTY	4 cut(s)	622, 931, 974, 1910
AcuI	CTGAAG	2 cut(s)	1040, 2036
AcyI	GRCGYC	4 cut(s)	192, 237, 324, 617
AfaI	GTAC	2 cut(s)	257, 1376
AfiI	CCNNNNNNNGG	4 cut(s)	104, 153, 410, 1346
AflIII	ACRYGT	1 cut(s)	959
AhdI	GACNNNNNGTC	1 cut(s)	169
AjiI	CACGTC	3 cut(s)	171, 682, 1465
AjnI	CCWGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
AjuI	GAANNNNNNNTTGG	4 cut(s)	1769, 1801, 1817, 1849
Alw21I	GWGCWC	2 cut(s)	213, 825
Alw26I	GTCTC	5 cut(s)	223, 608, 1324, 1578, 1613
Alw44I	GTGCAC	1 cut(s)	821
AlwI	GGATC	3 cut(s)	89, 1519, 1865
Ama87I	CYCGRG	1 cut(s)	1752
AoxI	GGCC	4 cut(s)	508, 1123, 1204, 1398
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	3 cut(s)	40, 420, 1859
ApoI	RAATTY	4 cut(s)	622, 931, 974, 1910
AsiSI	GCGATCGC	1 cut(s)	2087
Asp700I	GAANNNNTTC	2 cut(s)	1677, 1911
AspLEI	GCGC	7 cut(s)	159, 194, 282, 284, 301, 326, 555
AspS9I	GGNCC	3 cut(s)	163, 802, 1840
AsuHPI	GGTGA	3 cut(s)	1658, 1948, 2141
AsuII	TTCGAA	2 cut(s)	1684, 1760
AvaI	CYCGRG	1 cut(s)	1752
AvaII	GGWCC	3 cut(s)	163, 802, 1840
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	825, 1064
BalI	TGGCCA	1 cut(s)	1400
BanI	GGYRCC	2 cut(s)	191, 323
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	824
BbsI	GAAGAC	6 cut(s)	233, 739, 1019, 1670, 1729, 1949
Bbv12I	GWGCWC	2 cut(s)	213, 825
BbvI	GCAGC	3 cut(s)	27, 432, 1846
BccI	CCATC	9 cut(s)	158, 390, 404, 716, 1597, 1643, 1880, 2080, 2120
BceAI	ACGGC	1 cut(s)	1843
BciT130I	CCWGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
BcoDI	GTCTC	5 cut(s)	223, 608, 1324, 1578, 1613
BfaI	CTAG	7 cut(s)	449, 453, 936, 944, 1367, 1626, 1806
BfmI	CTRYAG	2 cut(s)	641, 1089
BfoI	RGCGCY	2 cut(s)	195, 327
BglI	GCCNNNNNGGC	1 cut(s)	1406
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	7 cut(s)	41, 106, 245, 327, 421, 1290, 1860
BlsI	GCNGC	7 cut(s)	42, 107, 246, 328, 422, 1291, 1861
Bme1390I	CCNGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
Bme18I	GGWCC	3 cut(s)	163, 802, 1840
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	1752
BmgBI	CACGTC	3 cut(s)	171, 682, 1465
BmgT120I	GGNCC	3 cut(s)	163, 802, 1840
BmiI	GGNNCC	7 cut(s)	109, 165, 193, 325, 340, 804, 1842
BmrFI	CCNGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
BmrI	ACTGGG	1 cut(s)	1860
BmsI	GCATC	7 cut(s)	1193, 1242, 1276, 1320, 1458, 1505, 2197
BmuI	ACTGGG	1 cut(s)	1860
BpiI	GAAGAC	6 cut(s)	233, 739, 1019, 1670, 1729, 1949
Bpu10I	CCTNAGC	1 cut(s)	1925
Bpu14I	TTCGAA	2 cut(s)	1684, 1760
BpuEI	CTTGAG	2 cut(s)	1295, 2158
BsaAI	YACGTR	2 cut(s)	962, 1419
BsaHI	GRCGYC	4 cut(s)	192, 237, 324, 617
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 153, 410, 1346
Bse118I	RCCGGY	3 cut(s)	188, 335, 1744
Bse1I	ACTGG	3 cut(s)	579, 1478, 1866
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	876
BseBI	CCWGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	415, 1184
BseLI	CCNNNNNNNGG	4 cut(s)	104, 153, 410, 1346
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	5 cut(s)	396, 1272, 1590, 1695, 2046
BseNI	ACTGG	3 cut(s)	579, 1478, 1866
BsePI	GCGCGC	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	59, 1646
BseSI	GKGCMC	2 cut(s)	825, 1064
BseXI	GCAGC	3 cut(s)	27, 432, 1846
BseYI	CCCAGC	2 cut(s)	1874, 2156
BsgI	GTGCAG	1 cut(s)	1197
Bsh1236I	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
Bsh1285I	CGRYCG	1 cut(s)	2087
BshFI	GGCC	4 cut(s)	510, 1125, 1206, 1400
BshNI	GGYRCC	2 cut(s)	191, 323
BsiEI	CGRYCG	1 cut(s)	2087
BsiHKAI	GWGCWC	2 cut(s)	213, 825
BsiHKCI	CYCGRG	1 cut(s)	1752
BsiSI	CCGG	4 cut(s)	189, 336, 342, 1745
BslFI	GGGAC	3 cut(s)	106, 326, 1667
BslI	CCNNNNNNNGG	4 cut(s)	104, 153, 410, 1346
BsmAI	GTCTC	5 cut(s)	223, 608, 1324, 1578, 1613
BsmBI	CGTCTC	2 cut(s)	223, 608
BsmFI	GGGAC	3 cut(s)	106, 326, 1667
BsmI	GAATGC	2 cut(s)	1615, 1878
BsnI	GGCC	4 cut(s)	510, 1125, 1206, 1400
BsoBI	CYCGRG	1 cut(s)	1752
Bsp119I	TTCGAA	2 cut(s)	1684, 1760
Bsp1286I	GDGCHC	3 cut(s)	213, 825, 1064
Bsp143I	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
BspANI	GGCC	4 cut(s)	510, 1125, 1206, 1400
BspCNI	CTCAG	5 cut(s)	397, 1271, 1591, 1696, 2047
BspFNI	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	7 cut(s)	109, 165, 193, 325, 340, 804, 1842
BspPI	GGATC	3 cut(s)	89, 1519, 1865
BspQI	GCTCTTC	1 cut(s)	2061
BspT104I	TTCGAA	2 cut(s)	1684, 1760
BspT107I	GGYRCC	2 cut(s)	191, 323
BsrBI	CCGCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	876
BsrFI	RCCGGY	3 cut(s)	188, 335, 1744
BsrI	ACTGG	3 cut(s)	579, 1478, 1866
BssAI	RCCGGY	3 cut(s)	188, 335, 1744
BssECI	CCNNGG	1 cut(s)	231
BssHII	GCGCGC	1 cut(s)	280
BssMI	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
BssNI	GRCGYC	4 cut(s)	192, 237, 324, 617
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
Bst4CI	ACNGT	3 cut(s)	1093, 1572, 2214
Bst6I	CTCTTC	7 cut(s)	752, 1653, 1926, 2012, 2031, 2061, 2133
BstACI	GRCGYC	4 cut(s)	192, 237, 324, 617
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	2 cut(s)	962, 1419
BstBI	TTCGAA	2 cut(s)	1684, 1760
BstC8I	GCNNGC	7 cut(s)	190, 282, 508, 1216, 1746, 1976, 2196
BstDEI	CTNAG	9 cut(s)	405, 726, 791, 815, 1258, 1599, 1704, 1925, 2055
BstF5I	GGATG	2 cut(s)	415, 1184
BstFNI	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
BstH2I	RGCGCY	2 cut(s)	195, 327
BstHHI	GCGC	7 cut(s)	159, 194, 282, 284, 301, 326, 555
BstKTI	GATC	8 cut(s)	84, 670, 781, 1238, 1527, 1782, 1873, 2087
BstMAI	GTCTC	5 cut(s)	223, 608, 1324, 1578, 1613
BstMBI	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
BstMCI	CGRYCG	1 cut(s)	2087
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 189, 298, 704, 839, 1406, 1856
BstNI	CCWGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
BstSCI	CCNGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
BstSFI	CTRYAG	2 cut(s)	641, 1089
BstSLI	GKGCMC	2 cut(s)	825, 1064
BstUI	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
BstV1I	GCAGC	3 cut(s)	27, 432, 1846
BstV2I	GAAGAC	6 cut(s)	233, 739, 1019, 1670, 1729, 1949
BstX2I	RGATCY	2 cut(s)	778, 1524
BstYI	RGATCY	2 cut(s)	778, 1524
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	510, 1125, 1206, 1400
BtrI	CACGTC	3 cut(s)	171, 682, 1465
BtsCI	GGATG	2 cut(s)	415, 1184
BtsIMutI	CAGTG	1 cut(s)	1873
Cac8I	GCNNGC	7 cut(s)	190, 282, 508, 1216, 1746, 1976, 2196
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	7 cut(s)	159, 194, 282, 284, 301, 326, 555
Cfr10I	RCCGGY	3 cut(s)	188, 335, 1744
Cfr13I	GGNCC	3 cut(s)	163, 802, 1840
CseI	GACGC	3 cut(s)	245, 625, 1967
CsiI	ACCWGGT	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	256, 1375
CviAII	CATG	5 cut(s)	78, 265, 607, 1031, 1079
CviQI	GTAC	2 cut(s)	256, 1375
DdeI	CTNAG	9 cut(s)	405, 726, 791, 815, 1258, 1599, 1704, 1925, 2055
DinI	GGCGCC	2 cut(s)	193, 325
DpnI	GATC	8 cut(s)	83, 669, 780, 1237, 1526, 1781, 1872, 2086
DpnII	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
DraI	TTTAAA	1 cut(s)	1425
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	2 cut(s)	1204, 1398
Eam1104I	CTCTTC	7 cut(s)	752, 1653, 1926, 2012, 2031, 2061, 2133
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	7 cut(s)	752, 1653, 1926, 2012, 2031, 2061, 2133
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	1125
Eco24I	GRGCYC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	163, 802, 1840
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	1040, 2036
Eco81I	CCTNAGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	1752
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	802
EcoRI	GAATTC	1 cut(s)	931
EcoRII	CCWGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	2 cut(s)	1615, 2229
EcoT38I	GRGCYC	1 cut(s)	213
EgeI	GGCGCC	2 cut(s)	193, 325
EheI	GGCGCC	2 cut(s)	193, 325
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	223, 608
FaeI	CATG	5 cut(s)	81, 268, 610, 1034, 1082
FalI	AAGNNNNNCTT	8 cut(s)	224, 256, 1665, 1697, 1769, 1801, 2093, 2125
FaqI	GGGAC	3 cut(s)	106, 326, 1667
FatI	CATG	5 cut(s)	77, 264, 606, 1030, 1078
FauI	CCCGC	2 cut(s)	135, 188
Fnu4HI	GCNGC	7 cut(s)	41, 106, 245, 327, 421, 1290, 1860
FokI	GGATG	2 cut(s)	422, 1171
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	7 cut(s)	41, 106, 245, 327, 421, 1290, 1860
FspBI	CTAG	7 cut(s)	449, 453, 936, 944, 1367, 1626, 1806
GlaI	GCGC	7 cut(s)	158, 193, 281, 283, 300, 325, 554
GluI	GCNGC	7 cut(s)	41, 106, 245, 327, 421, 1290, 1860
GsaI	CCCAGC	2 cut(s)	1878, 2160
HaeII	RGCGCY	2 cut(s)	195, 327
HaeIII	GGCC	4 cut(s)	510, 1125, 1206, 1400
HapII	CCGG	4 cut(s)	189, 336, 342, 1745
HgaI	GACGC	3 cut(s)	245, 625, 1967
HhaI	GCGC	7 cut(s)	159, 194, 282, 284, 301, 326, 555
Hin1I	GRCGYC	4 cut(s)	192, 237, 324, 617
Hin1II	CATG	5 cut(s)	81, 268, 610, 1034, 1082
Hin6I	GCGC	7 cut(s)	157, 192, 280, 282, 299, 324, 553
HinP1I	GCGC	7 cut(s)	157, 192, 280, 282, 299, 324, 553
HindIII	AAGCTT	1 cut(s)	2196
HpaII	CCGG	4 cut(s)	189, 336, 342, 1745
HphI	GGTGA	3 cut(s)	1658, 1948, 2141
Hpy166II	GTNNAC	7 cut(s)	163, 258, 635, 823, 965, 1508, 1840
Hpy8I	GTNNAC	7 cut(s)	163, 258, 635, 823, 965, 1508, 1840
Hpy99I	CGWCG	3 cut(s)	1983, 1986, 2048
HpyCH4III	ACNGT	3 cut(s)	1093, 1572, 2214
HpyCH4IV	ACGT	6 cut(s)	170, 461, 681, 961, 1418, 1464
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 189, 298, 704, 839, 1406, 1856
HpyF3I	CTNAG	9 cut(s)	405, 726, 791, 815, 1258, 1599, 1704, 1925, 2055
HpySE526I	ACGT	6 cut(s)	170, 461, 681, 961, 1418, 1464
Hsp92I	GRCGYC	4 cut(s)	192, 237, 324, 617
Hsp92II	CATG	5 cut(s)	81, 268, 610, 1034, 1082
HspAI	GCGC	7 cut(s)	157, 192, 280, 282, 299, 324, 553
KasI	GGCGCC	2 cut(s)	191, 323
KroI	GCCGGC	2 cut(s)	188, 1744
KroNI	GCCGGC	2 cut(s)	190, 1746
Kzo9I	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
LguI	GCTCTTC	1 cut(s)	2061
LmnI	GCTCC	9 cut(s)	72, 113, 216, 344, 550, 909, 1005, 1633, 1867
Lsp1109I	GCAGC	3 cut(s)	27, 432, 1846
LweI	GCATC	7 cut(s)	1193, 1242, 1276, 1320, 1458, 1505, 2197
MabI	ACCWGGT	1 cut(s)	197
MaeI	CTAG	7 cut(s)	449, 453, 936, 944, 1367, 1626, 1806
MaeII	ACGT	6 cut(s)	170, 461, 681, 961, 1418, 1464
MalI	GATC	8 cut(s)	83, 669, 780, 1237, 1526, 1781, 1872, 2086
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
MflI	RGATCY	2 cut(s)	778, 1524
MhlI	GDGCHC	3 cut(s)	213, 825, 1064
MlsI	TGGCCA	1 cut(s)	1400
MluNI	TGGCCA	1 cut(s)	1400
Mly113I	GGCGCC	2 cut(s)	192, 324
MlyI	GAGTC	4 cut(s)	343, 1615, 2066, 2165
MmeI	TCCRAC	6 cut(s)	135, 165, 461, 463, 506, 1027
Mox20I	TGGCCA	1 cut(s)	1400
Mph1103I	ATGCAT	2 cut(s)	1615, 2229
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	2 cut(s)	188, 1744
MroXI	GAANNNNTTC	2 cut(s)	1677, 1911
MscI	TGGCCA	1 cut(s)	1400
MseI	TTAA	4 cut(s)	473, 690, 993, 1424
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	1400
MspI	CCGG	4 cut(s)	189, 336, 342, 1745
MspR9I	CCNGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
Mva1269I	GAATGC	2 cut(s)	1615, 1878
MvaI	CCWGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
MvnI	CGCG	6 cut(s)	28, 159, 282, 284, 299, 555
MwoI	GCNNNNNNNGC	7 cut(s)	40, 189, 298, 704, 839, 1406, 1856
NaeI	GCCGGC	2 cut(s)	190, 1746
NarI	GGCGCC	2 cut(s)	192, 324
NdeII	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
NgoMIV	GCCGGC	2 cut(s)	188, 1744
NlaIII	CATG	5 cut(s)	81, 268, 610, 1034, 1082
NlaIV	GGNNCC	7 cut(s)	109, 165, 193, 325, 340, 804, 1842
NmeAIII	GCCGAG	1 cut(s)	232
NsiI	ATGCAT	2 cut(s)	1615, 2229
NspV	TTCGAA	2 cut(s)	1684, 1760
PagI	TCATGA	1 cut(s)	1078
PauI	GCGCGC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	1125
PciSI	GCTCTTC	1 cut(s)	2061
PctI	GAATGC	2 cut(s)	1615, 1878
PdiI	GCCGGC	2 cut(s)	190, 1746
PdmI	GAANNNNTTC	2 cut(s)	1677, 1911
PfeI	GAWTC	6 cut(s)	86, 364, 400, 940, 2051, 2219
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	7 cut(s)	42, 107, 246, 328, 422, 1291, 1861
Ple19I	CGATCG	1 cut(s)	2087
PleI	GAGTC	4 cut(s)	343, 1615, 2065, 2165
PluTI	GGCGCC	2 cut(s)	195, 327
PpsI	GAGTC	4 cut(s)	343, 1615, 2065, 2165
Ppu21I	YACGTR	2 cut(s)	962, 1419
PpuMI	RGGWCCY	1 cut(s)	802
Psp124BI	GAGCTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	802
Psp6I	CCWGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
PspFI	CCCAGC	2 cut(s)	1874, 2156
PspGI	CCWGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
PspN4I	GGNNCC	7 cut(s)	109, 165, 193, 325, 340, 804, 1842
PspPI	GGNCC	3 cut(s)	163, 802, 1840
PspPPI	RGGWCCY	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	778, 1524
PteI	GCGCGC	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	2087
RgaI	GCGATCGC	1 cut(s)	2087
RsaI	GTAC	2 cut(s)	257, 1376
RsaNI	GTAC	2 cut(s)	256, 1375
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	2061
SaqAI	TTAA	4 cut(s)	473, 690, 993, 1424
SatI	GCNGC	7 cut(s)	41, 106, 245, 327, 421, 1290, 1860
Sau3AI	GATC	8 cut(s)	81, 667, 778, 1235, 1524, 1779, 1870, 2084
Sau96I	GGNCC	3 cut(s)	163, 802, 1840
SchI	GAGTC	4 cut(s)	343, 1615, 2066, 2165
ScrFI	CCNGG	6 cut(s)	199, 253, 588, 1008, 1139, 1392
SduI	GDGCHC	3 cut(s)	213, 825, 1064
SexAI	ACCWGGT	1 cut(s)	197
SfaAI	GCGATCGC	1 cut(s)	2087
SfaNI	GCATC	7 cut(s)	1193, 1242, 1276, 1320, 1458, 1505, 2197
SfcI	CTRYAG	2 cut(s)	641, 1089
SfoI	GGCGCC	2 cut(s)	193, 325
SfuI	TTCGAA	2 cut(s)	1684, 1760
SgfI	GCGATCGC	1 cut(s)	2087
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	3 cut(s)	163, 802, 1840
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	1274, 2173
SmoI	CTYRAG	2 cut(s)	1274, 2173
SseBI	AGGCCT	1 cut(s)	1125
SspDI	GGCGCC	2 cut(s)	191, 323
SspMI	CTAG	7 cut(s)	449, 453, 936, 944, 1367, 1626, 1806
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	1125
StyD4I	CCNGG	6 cut(s)	197, 251, 586, 1006, 1137, 1390
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	1093, 1572, 2214
TaiI	ACGT	6 cut(s)	173, 464, 684, 964, 1421, 1467
TaqI	TCGA	8 cut(s)	17, 54, 84, 956, 1103, 1118, 1684, 1760
TaqII	GACCGA	1 cut(s)	284
TauI	GCSGC	4 cut(s)	108, 247, 329, 1292
TfiI	GAWTC	6 cut(s)	86, 364, 400, 940, 2051, 2219
Tru1I	TTAA	4 cut(s)	473, 690, 993, 1424
Tru9I	TTAA	4 cut(s)	473, 690, 993, 1424
TscAI	CASTG	1 cut(s)	1873
TseI	GCWGC	3 cut(s)	40, 420, 1859
TspGWI	ACGGA	1 cut(s)	1517
TspRI	CASTG	1 cut(s)	1873
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	3 cut(s)	163, 802, 1840
XapI	RAATTY	4 cut(s)	622, 931, 974, 1910
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 1561
XmnI	GAANNNNTTC	2 cut(s)	1677, 1911
XspI	CTAG	7 cut(s)	449, 453, 936, 944, 1367, 1626, 1806
Zsp2I	ATGCAT	2 cut(s)	1615, 2229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.