Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Forward (+)

30798803 .. 30802930

Gene Structure 4128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGAGAAAACCACCGAAATCTAAGAAGGCCCGCAAGCTGAAGCGGGAGTCGGAGGTCGAAGAAATCAAGGTTCTAAATTCATGGATCGAATCCCAGAAACCCGACTGCGGGTCCAATCCCATGTCTCTCCCACCTTTACCCACAAAATCACCCATTGGCCGCCTGGACTCGACACCCACCTTTTCTCGCTATGCTGGCACCACCAGCTTCCATCAGTTGCCGATTTCCAAGAGGACCAAGGACGCCTTGCGCCGAGCTAACTTCACCCACATGACCGATATCCAGAGGGCGTCTTTGCCTCACGCGCTCTGCGGCAGAGATATTCTCGGTGCCGCCAAGACTGGCTCCGGCAAGACTCTGGCTTTTGTAATACCGGTTGTAGAAAAATTACATAGGGAGAGATGGAATCCTGAGGATGGGGTAGGCAGCATCATAATATCTCCGACAAGGGAGTTAGCTGCTCAAACTTTTGATGTACTAAAATGGGTTGGCAAGTACCATAATTTTAGTGCTGGCCTCTTAATTGGTGGTCGCAAAGATGTTCAAGTGGAAAAGGAGCGAGTTAATGGTCTCAACATACTAGTCTGTACTCCTGGCCGGCTTCTCCAGCACATGGATGAGACACCAAATTTTGATTGTTCCCAGCTACAGGTTTTGGTCCTTGATGAGGCAGATCGTATTCTTGATGTGGGATTTAAAAAGACACTGAATGCAGTCATCTCACAGCTACCAAAGAGAAGACAAACTCTTCTCTTCTCAGCAACTCAAACAAAGTCGGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTACCTCAGTGTGCATGAGAAGTCTACTAGAGCCACTCCCAATCATTTACAGCAAACAGCAGTCATTGTTCCACTGGATCAGAAAATAGACATGTTGTGGAGCTTCATAAAGGCACATCTAAATTCTAGGATTCTAGTGTTTCTATCAACCCGCAAGCAGGTAAAATTTGTCTTTGAAGCATTTAAAAAGCTGCGTCCTGGAATACCCTTGAAGTGTCTTCATGGTAAGATGAAGCAAGAGGGAAGAATGGGAACATACTCACAGTTTCATGAAAAACCTTCAGTTCTCTTCTCGACTGATGTGGCATCAAGAGGCCTTGACTTCAACAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCAGAAGATGTTGCATCGTACATACACAGAGTTGGCCGAACTGCCCGCTATCATTCTGAAGGGCGATCTGTTTTATTTCTGATGCCCTCAGAACAGAAAATGCTTGAGAAATTAGATGCTGCAAGAATACCCATTCAGTGCATCAAGGCTAACAACAAAAGGCTTCAACCAGTGTCTTCATTGTTGTCATCTTTGCTAGTCAAGTATCCTGGTACACTCCTGGGTCTGGCAAAAAGGGCCTTTATCACTTACTTGAAGTCCATTCAAAATCACAAGGACAAAGAAATTTTTGATGTGTCGAAACTGCCACTTAATGAATTTTCAGCATCTATGGGTCTACCAATGACCCCCAGAATCCGTTCTTCAAATCAGAAAATGAAGTCCAAGACAGCGGGAGAACTATATCCTATTGGTGAACCAGAAAGTTCTGATATGGAGAACGGATTAGAGATTCCCAAAGAGGAACTTGATATTGGTGATTTGAATGACGAGGAAGTGGATAACGATGTTCTTCTAACAAATGAGGGAACAGAGGAAGGAACAAAAATTGGAGATTATGTGTATGTTCTTTGTCCATTACGTTTTATGCATATGTTTGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

593

Amino Acids

66.82

Weight (kDa)

9.32

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	92 - 263	2.8e-44	DEAD/DEAH box helicase
ResIII	PF04851	111 - 255	1.9e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	300 - 409	1.2e-23	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	467 - 511	1.4e-12	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	964
AccB1I	GGYRCC	2 cut(s)	197, 329
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	839, 1513
AccII	CGCG	1 cut(s)	305
AciI	CCGC	9 cut(s)	31, 43, 108, 160, 312, 333, 967, 1222, 1568
AclWI	GGATC	2 cut(s)	92, 900
AcoI	YGGCCR	3 cut(s)	157, 595, 1210
AcsI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
AcuI	CTGAAG	3 cut(s)	59, 1080, 1254
AcyI	GRCGYC	2 cut(s)	243, 290
AfaI	GTAC	6 cut(s)	477, 497, 589, 818, 1196, 1390
AfiI	CCNNNNNNNGG	8 cut(s)	107, 108, 416, 613, 649, 667, 973, 1402
AflIII	ACRYGT	1 cut(s)	906
AgeI	ACCGGT	1 cut(s)	373
AhdI	GACNNNNNGTC	1 cut(s)	109
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	5 cut(s)	162, 592, 1012, 1384, 1395
AjuI	GAANNNNNNNTTGG	2 cut(s)	1632, 1664
AluBI	AGCT	8 cut(s)	37, 207, 257, 458, 646, 727, 918, 1006
AluI	AGCT	8 cut(s)	37, 207, 257, 458, 646, 727, 918, 1006
Alw26I	GTCTC	3 cut(s)	129, 575, 614
AlwI	GGATC	2 cut(s)	92, 900
AoxI	GGCC	7 cut(s)	27, 157, 514, 595, 1129, 1210, 1413
ApeKI	GCWGC	4 cut(s)	426, 458, 1006, 1295
ApoI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
AsiGI	ACCGGT	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	1534
AspLEI	GCGC	2 cut(s)	252, 307
AspS9I	GGNCC	6 cut(s)	28, 111, 234, 658, 808, 1413
AsuHPI	GGTGA	4 cut(s)	141, 256, 1601, 1664
AvaII	GGWCC	4 cut(s)	111, 234, 658, 808
AxyI	CCTNAGG	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	197, 329
BbsI	GAAGAC	3 cut(s)	745, 1025, 1344
BbvI	GCAGC	4 cut(s)	438, 445, 993, 1282
BccI	CCATC	3 cut(s)	219, 396, 410
BciT130I	CCWGG	5 cut(s)	164, 594, 1014, 1386, 1397
BciVI	GTATCC	1 cut(s)	1392
BcoDI	GTCTC	3 cut(s)	129, 575, 614
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	5 cut(s)	581, 843, 942, 950, 1373
BfmI	CTRYAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	1392
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	7 cut(s)	160, 313, 333, 427, 459, 1007, 1296
BlsI	GCNGC	7 cut(s)	161, 314, 334, 428, 460, 1008, 1297
Bme1390I	CCNGG	5 cut(s)	164, 594, 1014, 1386, 1397
Bme18I	GGWCC	4 cut(s)	111, 234, 658, 808
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	6 cut(s)	28, 111, 234, 658, 808, 1413
BmiI	GGNNCC	5 cut(s)	112, 199, 331, 346, 810
BmrFI	CCNGG	5 cut(s)	164, 594, 1014, 1386, 1397
BmrI	ACTGGG	1 cut(s)	1165
BmsI	GCATC	7 cut(s)	438, 1130, 1199, 1248, 1282, 1326, 1511
BmuI	ACTGGG	1 cut(s)	1165
BpiI	GAAGAC	3 cut(s)	745, 1025, 1344
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpmI	CTGGAG	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	1301
BsaHI	GRCGYC	2 cut(s)	243, 290
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	237, 1396
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	1719, 1749
Bsc4I	CCNNNNNNNGG	8 cut(s)	107, 108, 416, 613, 649, 667, 973, 1402
Bse118I	RCCGGY	2 cut(s)	373, 597
Bse1I	ACTGG	4 cut(s)	346, 894, 1160, 1346
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	5 cut(s)	164, 594, 1014, 1386, 1397
BseDI	CCNNGG	2 cut(s)	237, 1396
BseGI	GGATG	2 cut(s)	421, 622
BseLI	CCNNNNNNNGG	8 cut(s)	107, 108, 416, 613, 649, 667, 973, 1402
BseMII	CTCAG	4 cut(s)	402, 771, 835, 1278
BseNI	ACTGG	4 cut(s)	346, 894, 1160, 1346
BseXI	GCAGC	4 cut(s)	438, 445, 993, 1282
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	7 cut(s)	29, 159, 516, 597, 1131, 1212, 1415
BshNI	GGYRCC	2 cut(s)	197, 329
BshTI	ACCGGT	1 cut(s)	373
BsiSI	CCGG	3 cut(s)	348, 374, 598
BslI	CCNNNNNNNGG	8 cut(s)	107, 108, 416, 613, 649, 667, 973, 1402
BsmAI	GTCTC	3 cut(s)	129, 575, 614
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	7 cut(s)	29, 159, 516, 597, 1131, 1212, 1415
Bso31I	GGTCTC	1 cut(s)	575
Bsp143I	GATC	5 cut(s)	84, 673, 784, 892, 1241
BspACI	CCGC	9 cut(s)	31, 43, 108, 160, 312, 333, 967, 1222, 1568
BspANI	GGCC	7 cut(s)	29, 159, 516, 597, 1131, 1212, 1415
BspCNI	CTCAG	4 cut(s)	403, 770, 834, 1277
BspFNI	CGCG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	1084
BspLI	GGNNCC	5 cut(s)	112, 199, 331, 346, 810
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	2 cut(s)	92, 900
BspT107I	GGYRCC	2 cut(s)	197, 329
BspTNI	GGTCTC	1 cut(s)	575
BsrFI	RCCGGY	2 cut(s)	373, 597
BsrI	ACTGG	4 cut(s)	346, 894, 1160, 1346
BssAI	RCCGGY	2 cut(s)	373, 597
BssECI	CCNNGG	2 cut(s)	237, 1396
BssMI	GATC	5 cut(s)	84, 673, 784, 892, 1241
BssNI	GRCGYC	2 cut(s)	243, 290
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	5 cut(s)	164, 594, 1014, 1386, 1397
Bst4CI	ACNGT	1 cut(s)	1080
Bst6I	CTCTTC	3 cut(s)	753, 758, 1109
BstACI	GRCGYC	2 cut(s)	243, 290
BstC8I	GCNNGC	7 cut(s)	31, 35, 196, 514, 599, 971, 1222
BstDEI	CTNAG	6 cut(s)	21, 411, 757, 797, 821, 1264
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	421, 622
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	252, 307
BstKTI	GATC	5 cut(s)	87, 676, 787, 895, 1244
BstMAI	GTCTC	3 cut(s)	129, 575, 614
BstMBI	GATC	5 cut(s)	84, 673, 784, 892, 1241
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 204, 304, 607, 1412
BstNI	CCWGG	5 cut(s)	164, 594, 1014, 1386, 1397
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	5 cut(s)	162, 592, 1012, 1384, 1395
BstSFI	CTRYAG	1 cut(s)	647
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	4 cut(s)	438, 445, 993, 1282
BstV2I	GAAGAC	3 cut(s)	745, 1025, 1344
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
Bsu36I	CCTNAGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	1392
BsuRI	GGCC	7 cut(s)	29, 159, 516, 597, 1131, 1212, 1415
BtsCI	GGATG	2 cut(s)	421, 622
BtsIMutI	CAGTG	5 cut(s)	704, 829, 887, 1319, 1353
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	7 cut(s)	31, 35, 196, 514, 599, 971, 1222
CciI	TCATGA	1 cut(s)	1084
CfoI	GCGC	2 cut(s)	252, 307
Cfr10I	RCCGGY	2 cut(s)	373, 597
Cfr13I	GGNCC	6 cut(s)	28, 111, 234, 658, 808, 1413
CseI	GACGC	3 cut(s)	251, 279, 998
Csp6I	GTAC	6 cut(s)	476, 496, 588, 817, 1195, 1389
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	8 cut(s)	81, 121, 271, 613, 830, 907, 1037, 1085
CviQI	GTAC	6 cut(s)	476, 496, 588, 817, 1195, 1389
DdeI	CTNAG	6 cut(s)	21, 411, 757, 797, 821, 1264
DpnI	GATC	5 cut(s)	86, 675, 786, 894, 1243
DpnII	GATC	5 cut(s)	84, 673, 784, 892, 1241
DraI	TTTAAA	2 cut(s)	697, 1000
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	3 cut(s)	157, 595, 1210
Eam1104I	CTCTTC	3 cut(s)	753, 758, 1109
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	3 cut(s)	753, 758, 1109
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	1131
Eco31I	GGTCTC	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	4 cut(s)	111, 234, 658, 808
Eco57I	CTGAAG	3 cut(s)	59, 1080, 1254
Eco81I	CCTNAGG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	2 cut(s)	808, 1413
EcoRII	CCWGG	5 cut(s)	162, 592, 1012, 1384, 1395
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	1767
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	8 cut(s)	84, 124, 274, 616, 833, 910, 1040, 1088
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 1626, 1658
FatI	CATG	8 cut(s)	80, 120, 270, 612, 829, 906, 1036, 1084
FauI	CCCGC	6 cut(s)	36, 38, 101, 974, 1229, 1561
FauNDI	CATATG	1 cut(s)	1767
FblI	GTMKAC	2 cut(s)	839, 1513
Fnu4HI	GCNGC	7 cut(s)	160, 313, 333, 427, 459, 1007, 1296
FokI	GGATG	2 cut(s)	428, 629
Fsp4HI	GCNGC	7 cut(s)	160, 313, 333, 427, 459, 1007, 1296
FspBI	CTAG	5 cut(s)	581, 843, 942, 950, 1373
GlaI	GCGC	2 cut(s)	251, 306
GluI	GCNGC	7 cut(s)	160, 313, 333, 427, 459, 1007, 1296
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	7 cut(s)	29, 159, 516, 597, 1131, 1212, 1415
HapII	CCGG	3 cut(s)	348, 374, 598
HgaI	GACGC	3 cut(s)	251, 279, 998
HhaI	GCGC	2 cut(s)	252, 307
Hin1I	GRCGYC	2 cut(s)	243, 290
Hin1II	CATG	8 cut(s)	84, 124, 274, 616, 833, 910, 1040, 1088
Hin6I	GCGC	2 cut(s)	250, 305
HinP1I	GCGC	2 cut(s)	250, 305
HincII	GTYRAC	1 cut(s)	1153
HindII	GTYRAC	1 cut(s)	1153
HinfI	GANTC	8 cut(s)	47, 89, 167, 355, 406, 946, 1530, 1627
HpaII	CCGG	3 cut(s)	348, 374, 598
HphI	GGTGA	4 cut(s)	141, 256, 1601, 1664
Hpy166II	GTNNAC	5 cut(s)	840, 1153, 1391, 1514, 1592
Hpy188I	TCNGA	8 cut(s)	52, 444, 897, 1234, 1257, 1267, 1548, 1606
Hpy188III	TCNNGA	8 cut(s)	283, 410, 683, 782, 1085, 1108, 1125, 1178
Hpy8I	GTNNAC	5 cut(s)	840, 1153, 1391, 1514, 1592
HpyAV	CCTTC	5 cut(s)	19, 799, 1104, 1229, 1706
HpyCH4III	ACNGT	1 cut(s)	1080
HpyCH4IV	ACGT	1 cut(s)	1756
HpyCH4V	TGCA	7 cut(s)	713, 791, 829, 1190, 1298, 1317, 1765
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 204, 304, 607, 1412
HpyF3I	CTNAG	6 cut(s)	21, 411, 757, 797, 821, 1264
HpySE526I	ACGT	1 cut(s)	1756
Hsp92I	GRCGYC	2 cut(s)	243, 290
Hsp92II	CATG	8 cut(s)	84, 124, 274, 616, 833, 910, 1040, 1088
HspAI	GCGC	2 cut(s)	250, 305
KroI	GCCGGC	1 cut(s)	597
KroNI	GCCGGC	1 cut(s)	599
Kzo9I	GATC	5 cut(s)	84, 673, 784, 892, 1241
LmnI	GCTCC	3 cut(s)	350, 556, 915
Lsp1109I	GCAGC	4 cut(s)	438, 445, 993, 1282
LweI	GCATC	7 cut(s)	438, 1130, 1199, 1248, 1282, 1326, 1511
MaeI	CTAG	5 cut(s)	581, 843, 942, 950, 1373
MaeII	ACGT	1 cut(s)	1756
MalI	GATC	5 cut(s)	86, 675, 786, 894, 1243
MboI	GATC	5 cut(s)	84, 673, 784, 892, 1241
MflI	RGATCY	1 cut(s)	784
MlyI	GAGTC	3 cut(s)	56, 161, 349
MmeI	TCCRAC	2 cut(s)	30, 467
Mph1103I	ATGCAT	1 cut(s)	1767
MroNI	GCCGGC	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	1534
MseI	TTAA	6 cut(s)	521, 564, 696, 999, 1488, 1780
MslI	CAYNNNNRTG	2 cut(s)	269, 615
MspA1I	CMGCKG	1 cut(s)	1568
MspI	CCGG	3 cut(s)	348, 374, 598
MspR9I	CCNGG	5 cut(s)	164, 594, 1014, 1386, 1397
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	5 cut(s)	164, 594, 1014, 1386, 1397
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	195, 204, 304, 607, 1412
NaeI	GCCGGC	1 cut(s)	599
NdeI	CATATG	1 cut(s)	1767
NdeII	GATC	5 cut(s)	84, 673, 784, 892, 1241
NgoMIV	GCCGGC	1 cut(s)	597
NlaIII	CATG	8 cut(s)	84, 124, 274, 616, 833, 910, 1040, 1088
NlaIV	GGNNCC	5 cut(s)	112, 199, 331, 346, 810
NmeAIII	GCCGAG	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	1767
NspI	RCATGY	1 cut(s)	910
PagI	TCATGA	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	1131
PciI	ACATGT	1 cut(s)	906
PctI	GAATGC	1 cut(s)	715
PdiI	GCCGGC	1 cut(s)	599
PdmI	GAANNNNTTC	1 cut(s)	1534
PfeI	GAWTC	5 cut(s)	89, 406, 946, 1530, 1627
PflMI	CCANNNNNTGG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	1012
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	7 cut(s)	161, 314, 334, 428, 460, 1008, 1297
PleI	GAGTC	3 cut(s)	55, 161, 349
PpsI	GAGTC	3 cut(s)	55, 161, 349
PpuMI	RGGWCCY	1 cut(s)	808
PscI	ACATGT	1 cut(s)	906
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	5 cut(s)	162, 592, 1012, 1384, 1395
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	5 cut(s)	162, 592, 1012, 1384, 1395
PspN4I	GGNNCC	5 cut(s)	112, 199, 331, 346, 810
PspPI	GGNCC	6 cut(s)	28, 111, 234, 658, 808, 1413
PspPPI	RGGWCCY	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	784
RsaI	GTAC	6 cut(s)	477, 497, 589, 818, 1196, 1390
RsaNI	GTAC	6 cut(s)	476, 496, 588, 817, 1195, 1389
RseI	CAYNNNNRTG	2 cut(s)	269, 615
SaqAI	TTAA	6 cut(s)	521, 564, 696, 999, 1488, 1780
SatI	GCNGC	7 cut(s)	160, 313, 333, 427, 459, 1007, 1296
Sau3AI	GATC	5 cut(s)	84, 673, 784, 892, 1241
Sau96I	GGNCC	6 cut(s)	28, 111, 234, 658, 808, 1413
SchI	GAGTC	3 cut(s)	56, 161, 349
ScrFI	CCNGG	5 cut(s)	164, 594, 1014, 1386, 1397
SfaNI	GCATC	7 cut(s)	438, 1130, 1199, 1248, 1282, 1326, 1511
SfcI	CTRYAG	1 cut(s)	647
SinI	GGWCC	4 cut(s)	111, 234, 658, 808
SmiMI	CAYNNNNRTG	2 cut(s)	269, 615
SmlI	CTYRAG	1 cut(s)	1280
SmoI	CTYRAG	1 cut(s)	1280
SpeI	ACTAGT	1 cut(s)	580
SseBI	AGGCCT	1 cut(s)	1131
SsiI	CCGC	9 cut(s)	31, 43, 108, 160, 312, 333, 967, 1222, 1568
SspMI	CTAG	5 cut(s)	581, 843, 942, 950, 1373
StuI	AGGCCT	1 cut(s)	1131
StyD4I	CCNGG	5 cut(s)	162, 592, 1012, 1384, 1395
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	1080
TaiI	ACGT	1 cut(s)	1759
TaqI	TCGA	5 cut(s)	57, 87, 170, 1109, 1475
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	2 cut(s)	475, 587
TauI	GCSGC	3 cut(s)	162, 315, 335
TfiI	GAWTC	5 cut(s)	89, 406, 946, 1530, 1627
Tru1I	TTAA	6 cut(s)	521, 564, 696, 999, 1488, 1780
Tru9I	TTAA	6 cut(s)	521, 564, 696, 999, 1488, 1780
TscAI	CASTG	5 cut(s)	711, 829, 894, 1319, 1353
TseI	GCWGC	4 cut(s)	426, 458, 1006, 1295
TspDTI	ATGAA	9 cut(s)	69, 910, 1025, 1061, 1073, 1101, 1344, 1506, 1568
TspGWI	ACGGA	2 cut(s)	1523, 1632
TspRI	CASTG	5 cut(s)	711, 829, 894, 1319, 1353
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	4 cut(s)	111, 234, 658, 808
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
XceI	RCATGY	1 cut(s)	910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	839, 1513
XmnI	GAANNNNTTC	1 cut(s)	1534
XspI	CTAG	5 cut(s)	581, 843, 942, 950, 1373
Zsp2I	ATGCAT	1 cut(s)	1767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.