Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009742.1

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Forward (+)

14917 .. 21227

Gene Structure 6311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009742.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

atgattgtctatagccagacgttttctccaccgctgctgacccaactccagaacaggaactaccccgagaccgcgaaagagaagattgtcactgccacatccttaatcccatcgtcccgccaccggcagctccgccgccaccgccttgacgccaaccttccatcatccccactactcaggcaaggcgcagcaccccaccccaccccagacccaacccaaaccttccgaatccgaacgaagcaaactatctggatcgaaagcccgaagaaaccagcgaagccgccacccggtcatcaccgccaagagacctccgatcccaccactctaactcagagccaccccccgccgtccgcactcctccctcgtatagagcaataccgatcccacttgcctgccgccaacgtcgatgtcgccaaacgatctggtttgctccgtcatcccccgcaatctcttctccgactggacctctcacaatcgggtactaagtccctgctgtcccgtccgacgacgacgccggagggcgcgccgccggacaggcgctgctcactctctgttttgcctagggttgtagaaaaattacatagggagagatggaatcctgaggatggggtaggcagcatcataatatctccgacaagggagttagctgctcaaacttttgatgtactaaaatgggttggcaagtaccataattttagtgctggcctcttaattggtggtcgcaaagatgttcaagtggaaaaggagcgagttaatggtctcaacatactagtctgtactcctggccggcttctccagcacatggatgagacaccaaattttgattgttcccagctacaggttttggtccttgatgaggcagatcgtattcttgatgtgggatttaaaaagacactgaatgcagtcatctcacagctaccaaagagaagacaaactcttctcttctcagcaactcaaacaaagtcggttcaagatcttgcaagactaagtttgaaggacccagagtacctcagtgtgcatgagaagtctactagagccactcccaatcatttacagcaaacagcagtcattgttccactggatcagaaaatagacatgttgtggagcttcataaaggcacatctaaattctaggattctagtgtttctatcaacccgcaagcaggtaaaattcgtctttgaagcatttaaaaagctgcgtcctggaatacccttgaagtgtcttcatggtaagatgaagcaagagggaagaatgggaacatactcacagtttcatgaaaaaccttcagttctcttctcgactgatgtggcttcaagaggccttgacttcaacaaggcagttgactgggtggttcaggtggattgtccagaagatgttgcatcgtacatacacagagttggccgaactgcccgctatcattctgaagggcgatctgttttatttctgatgccctcagaacagaaaatgcttgagaaattagatgctgcaagaatacccattcagtgcatcaaggctaacaacaaaaggcttcaaccagtgtcttcattgttgtcatctttgctagtcaagtatcctggtacactcctgggtctggcaaaaagggcctttatcacttacttgaagtccattcaaaatcacaaggacaaagaaatttttgatgtgtcgaaactgccacttaatgaattttcagcatctatgggtctaccaatgacccccagaatccgttcttcaaatcataaaatgaagtccaagacagcgggagaactatatcctattggtgaaccagaaagttctgacatggagaacggattagagattcccaaagaggaacttgatattggtgatttgaatgacgaggaagtggataacgatgttcttctaacaaatgagggaacagaggaaggaacaaaaattggagattatgtgccagcgactcgactcatgaagaaaaggaagttggagttgactatcaagaaacctgtggcaactaggacagtctttgatgattcatgcaacccgatatcgccctttgcaaagatggctgttaccatacatgctagtgatcccatattgcttgatgaacttaaagacaagaaacaaaaatattatgataaggttagggaagagttgaagagatcagaaccagaagacaagattctagaccgccagcgttgcaatgaaaaacgaaggaaagagaagatgaagaggagtagagtgaatgaaggagaagaggaacaggatgatctttctgattccaaagaagagccatatgagtatcgaccctgcaaaaggcaacaaggaatgaggttttgtgacaaatatcccataataaccacaggaatgaaattttgtgataagatgctttcttgctgttgcttgtcaatggcggtgatggcaggtcttggtctgcttgttctgttcttcattgcgttgtgggacgctgaggcggtgttgagttcaggggttgcaggcgttgttgtttctgcgcccaagctcaacggtgacatgaatgaggcgacctccgggagggatccatgggaagatgttctctggcgtgcaggcgatcttgatctcccggacagtgacagagcgcgggtttgctcggacgcggggacaattgcttatgctggtggtgctcatcggtatatcgacggtcagtacggaggtaagagtggctgtcaatttgcaccggggattccggagctgagggaggatctgcttttatctgacccgggtagatcgttggtggggattatggtgcgtctctgcgcatcggagaagcttacctttgatggtgaggatgcttggtgcaacgacgggccctaccacatctttggtggtcgcggcttgctggttggcggcggcggtgtgcaggtccggtggggtgtatcctgtggggtgctcttagcaatttttgcttgggccctctgggcttcacttttttctgtcgacttaggttgggccttcagtatcaggttttgggctgccttggttaagggagtggatggtgatctgtcacaatccgctcctattattgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

1013

Amino Acids

113.34

Weight (kDa)

8.93

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2770
Acc36I	ACCTGC	3 cut(s)	1153, 2387, 2863
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccBSI	CCGCTC	1 cut(s)	3026
AccI	GTMKAC	3 cut(s)	1028, 1702, 2949
AccII	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
AccIII	TCCGGA	1 cut(s)	2698
AclWI	GGATC	8 cut(s)	260, 308, 375, 1089, 2057, 2525, 2538, 2721
AcoI	YGGCCR	2 cut(s)	784, 1399
AcsI	RAATTY	6 cut(s)	817, 1126, 1169, 1650, 1682, 2345
AcuI	CTGAAG	3 cut(s)	1269, 1443, 2950
AcyI	GRCGYC	2 cut(s)	150, 512
AfaI	GTAC	8 cut(s)	481, 666, 686, 778, 1007, 1385, 1579, 2660
AflIII	ACRYGT	1 cut(s)	1095
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	4 cut(s)	781, 1201, 1573, 1584
AjuI	GAANNNNNNNTTGG	4 cut(s)	1821, 1853, 1940, 1972
AluBI	AGCT	9 cut(s)	130, 647, 835, 916, 1107, 1195, 2494, 2704, 2782
AluI	AGCT	9 cut(s)	130, 647, 835, 916, 1107, 1195, 2494, 2704, 2782
Alw21I	GWGCWC	2 cut(s)	2638, 2904
Alw26I	GTCTC	5 cut(s)	62, 299, 764, 803, 2768
AlwI	GGATC	8 cut(s)	260, 308, 375, 1089, 2057, 2525, 2538, 2721
AlwNI	CAGNNNCTG	1 cut(s)	540
Ama87I	CYCGRG	2 cut(s)	65, 2731
Aor13HI	TCCGGA	1 cut(s)	2698
AoxI	GGCC	8 cut(s)	703, 784, 1318, 1399, 1602, 2819, 2922, 2961
ApaI	GGGCCC	2 cut(s)	2823, 2926
ApeKI	GCWGC	9 cut(s)	34, 127, 188, 540, 615, 647, 1195, 1484, 2984
ApoI	RAATTY	6 cut(s)	817, 1126, 1169, 1650, 1682, 2345
AscI	GGCGCGCC	1 cut(s)	522
Asp700I	GAANNNNTTC	2 cut(s)	1723, 2544
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	7 cut(s)	188, 524, 526, 540, 2488, 2593, 2771
AsuC2I	CCSGG	6 cut(s)	288, 2524, 2576, 2691, 2732, 2733
AsuHPI	GGTGA	7 cut(s)	287, 1790, 1853, 2401, 2513, 2807, 3020
AvaI	CYCGRG	2 cut(s)	65, 2731
AvaII	GGWCC	4 cut(s)	463, 847, 997, 2875
AvrII	CCTAGG	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	600
BaeGI	GKGCMC	2 cut(s)	2823, 2926
BamHI	GGATCC	1 cut(s)	2530
BanII	GRGCYC	2 cut(s)	2823, 2926
BbsI	GAAGAC	4 cut(s)	934, 1214, 1533, 2154
Bbv12I	GWGCWC	2 cut(s)	2638, 2904
BbvCI	CCTCAGC	2 cut(s)	2442, 2705
BbvI	GCAGC	9 cut(s)	21, 139, 200, 527, 627, 634, 1182, 1471, 2971
BccI	CCATC	8 cut(s)	118, 169, 585, 599, 2032, 2386, 2786, 2999
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	4 cut(s)	783, 1203, 1575, 1586
BciVI	GTATCC	2 cut(s)	1581, 2899
BcnI	CCSGG	6 cut(s)	288, 2524, 2576, 2691, 2732, 2733
BcoDI	GTCTC	5 cut(s)	62, 299, 764, 803, 2768
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	9 cut(s)	561, 770, 1032, 1131, 1139, 1562, 1989, 2058, 2159
BfmI	CTRYAG	2 cut(s)	10, 836
BfoI	RGCGCY	1 cut(s)	541
BfuAI	ACCTGC	3 cut(s)	1153, 2387, 2863
BfuI	GTATCC	2 cut(s)	1581, 2899
BglI	GCCNNNNNGGC	2 cut(s)	535, 2930
BglII	AGATCT	1 cut(s)	973
BlnI	CCTAGG	1 cut(s)	560
Bme18I	GGWCC	4 cut(s)	463, 847, 997, 2875
BmeT110I	CYCGRG	2 cut(s)	65, 2731
BmiI	GGNNCC	4 cut(s)	999, 2532, 2821, 2924
BmrI	ACTGGG	1 cut(s)	1354
BmsI	GCATC	9 cut(s)	627, 1388, 1437, 1471, 1515, 1700, 2349, 2780, 2791
BmuI	ACTGGG	1 cut(s)	1354
BpiI	GAAGAC	4 cut(s)	934, 1214, 1533, 2154
BplI	GAGNNNNNCTC	2 cut(s)	2504, 2536
BpmI	CTGGAG	2 cut(s)	32, 779
Bpu10I	CCTNAGC	2 cut(s)	2442, 2705
BpuEI	CTTGAG	1 cut(s)	1490
BpuMI	CCSGG	6 cut(s)	288, 2524, 2576, 2691, 2732, 2733
BsaBI	GATNNNNATC	2 cut(s)	2568, 3009
BsaHI	GRCGYC	2 cut(s)	150, 512
BsaI	GGTCTC	3 cut(s)	62, 299, 764
BsaJI	CCNNGG	6 cut(s)	560, 1585, 2534, 2690, 2731, 2988
BsaWI	WCCGGW	2 cut(s)	2698, 2877
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 1908, 1938
Bse118I	RCCGGY	2 cut(s)	123, 786
Bse1I	ACTGG	4 cut(s)	465, 1083, 1349, 1535
Bse21I	CCTNAGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	2182, 2424
Bse8I	GATNNNNATC	2 cut(s)	2568, 3009
BseAI	TCCGGA	1 cut(s)	2698
BseBI	CCWGG	4 cut(s)	783, 1203, 1575, 1586
BseDI	CCNNGG	6 cut(s)	560, 1585, 2534, 2690, 2731, 2988
BseGI	GGATG	8 cut(s)	98, 164, 436, 610, 811, 2245, 2806, 3010
BseJI	GATNNNNATC	2 cut(s)	2568, 3009
BseMI	GCAATG	2 cut(s)	2182, 2424
BseMII	CTCAG	8 cut(s)	190, 344, 591, 960, 1024, 1467, 2433, 2696
BseNI	ACTGG	4 cut(s)	465, 1083, 1349, 1535
BsePI	GCGCGC	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	347, 2221
BseSI	GKGCMC	2 cut(s)	2823, 2926
BseXI	GCAGC	9 cut(s)	21, 139, 200, 527, 627, 634, 1182, 1471, 2971
BseYI	CCCAGC	1 cut(s)	831
BsgI	GTGCAG	2 cut(s)	2577, 2891
Bsh1236I	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
BshFI	GGCC	8 cut(s)	705, 786, 1320, 1401, 1604, 2821, 2924, 2963
BsiHKAI	GWGCWC	2 cut(s)	2638, 2904
BsiHKCI	CYCGRG	2 cut(s)	65, 2731
BslFI	GGGAC	5 cut(s)	100, 472, 481, 2450, 2626
BsmAI	GTCTC	5 cut(s)	62, 299, 764, 803, 2768
BsmBI	CGTCTC	1 cut(s)	2768
BsmFI	GGGAC	5 cut(s)	100, 472, 481, 2450, 2626
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	8 cut(s)	705, 786, 1320, 1401, 1604, 2821, 2924, 2963
Bso31I	GGTCTC	3 cut(s)	62, 299, 764
BsoBI	CYCGRG	2 cut(s)	65, 2731
Bsp120I	GGGCCC	2 cut(s)	2819, 2922
Bsp1286I	GDGCHC	4 cut(s)	2638, 2823, 2904, 2926
Bsp13I	TCCGGA	1 cut(s)	2698
Bsp19I	CCATGG	1 cut(s)	2534
BspANI	GGCC	8 cut(s)	705, 786, 1320, 1401, 1604, 2821, 2924, 2963
BspCNI	CTCAG	8 cut(s)	189, 343, 592, 959, 1023, 1466, 2434, 2697
BspEI	TCCGGA	1 cut(s)	2698
BspFNI	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
BspHI	TCATGA	2 cut(s)	1273, 1941
BspLI	GGNNCC	4 cut(s)	999, 2532, 2821, 2924
BspMI	ACCTGC	3 cut(s)	1153, 2387, 2863
BspPI	GGATC	8 cut(s)	260, 308, 375, 1089, 2057, 2525, 2538, 2721
BspQI	GCTCTTC	1 cut(s)	2256
BspTNI	GGTCTC	3 cut(s)	62, 299, 764
BsrBI	CCGCTC	1 cut(s)	3026
BsrDI	GCAATG	2 cut(s)	2182, 2424
BsrFI	RCCGGY	2 cut(s)	123, 786
BsrI	ACTGG	4 cut(s)	465, 1083, 1349, 1535
BssAI	RCCGGY	2 cut(s)	123, 786
BssECI	CCNNGG	6 cut(s)	560, 1585, 2534, 2690, 2731, 2988
BssHII	GCGCGC	1 cut(s)	522
BssNI	GRCGYC	2 cut(s)	150, 512
BssT1I	CCWWGG	3 cut(s)	560, 2534, 2988
Bst2UI	CCWGG	4 cut(s)	783, 1203, 1575, 1586
Bst4CI	ACNGT	5 cut(s)	1269, 1996, 2501, 2582, 2654
Bst6I	CTCTTC	9 cut(s)	456, 942, 947, 1298, 2118, 2126, 2198, 2223, 2256
BstACI	GRCGYC	2 cut(s)	150, 512
BstAPI	GCANNNNNTGC	1 cut(s)	2915
BstDSI	CCRYGG	1 cut(s)	2534
BstENI	CCTNNNNNAGG	3 cut(s)	854, 2287, 2524
BstF5I	GGATG	8 cut(s)	98, 164, 436, 610, 811, 2245, 2806, 3010
BstFNI	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	7 cut(s)	188, 524, 526, 540, 2488, 2593, 2771
BstMAI	GTCTC	5 cut(s)	62, 299, 764, 803, 2768
BstNI	CCWGG	4 cut(s)	783, 1203, 1575, 1586
BstNSI	RCATGY	2 cut(s)	1099, 2057
BstSFI	CTRYAG	2 cut(s)	10, 836
BstSLI	GKGCMC	2 cut(s)	2823, 2926
BstUI	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
BstV1I	GCAGC	9 cut(s)	21, 139, 200, 527, 627, 634, 1182, 1471, 2971
BstV2I	GAAGAC	4 cut(s)	934, 1214, 1533, 2154
BstX2I	RGATCY	3 cut(s)	973, 2530, 2713
BstXI	CCANNNNNNTGG	1 cut(s)	2834
BstYI	RGATCY	3 cut(s)	973, 2530, 2713
Bsu36I	CCTNAGG	1 cut(s)	600
BsuI	GTATCC	2 cut(s)	1581, 2899
BsuRI	GGCC	8 cut(s)	705, 786, 1320, 1401, 1604, 2821, 2924, 2963
BtgI	CCRYGG	1 cut(s)	2534
BtsCI	GGATG	8 cut(s)	98, 164, 436, 610, 811, 2245, 2806, 3010
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	7 cut(s)	90, 893, 1018, 1076, 1508, 1542, 2587
BveI	ACCTGC	3 cut(s)	1153, 2387, 2863
CaiI	CAGNNNCTG	1 cut(s)	540
CciI	TCATGA	2 cut(s)	1273, 1941
CfoI	GCGC	7 cut(s)	188, 524, 526, 540, 2488, 2593, 2771
Cfr10I	RCCGGY	2 cut(s)	123, 786
Cfr9I	CCCGGG	1 cut(s)	2731
CseI	GACGC	6 cut(s)	158, 520, 1187, 2447, 2615, 2750
Csp6I	GTAC	8 cut(s)	480, 665, 685, 777, 1006, 1384, 1578, 2659
CviQI	GTAC	8 cut(s)	480, 665, 685, 777, 1006, 1384, 1578, 2659
DraI	TTTAAA	2 cut(s)	886, 1189
EaeI	YGGCCR	2 cut(s)	784, 1399
Eam1104I	CTCTTC	9 cut(s)	456, 942, 947, 1298, 2118, 2126, 2198, 2223, 2256
EarI	CTCTTC	9 cut(s)	456, 942, 947, 1298, 2118, 2126, 2198, 2223, 2256
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	560, 2534, 2988
Eco147I	AGGCCT	1 cut(s)	1320
Eco24I	GRGCYC	2 cut(s)	2823, 2926
Eco31I	GGTCTC	3 cut(s)	62, 299, 764
Eco32I	GATATC	1 cut(s)	2022
Eco47I	GGWCC	4 cut(s)	463, 847, 997, 2875
Eco57I	CTGAAG	3 cut(s)	1269, 1443, 2950
Eco81I	CCTNAGG	1 cut(s)	600
Eco88I	CYCGRG	2 cut(s)	65, 2731
EcoNI	CCTNNNNNAGG	3 cut(s)	854, 2287, 2524
EcoO109I	RGGNCCY	4 cut(s)	997, 1602, 2820, 2923
EcoRII	CCWGG	4 cut(s)	781, 1201, 1573, 1584
EcoRV	GATATC	1 cut(s)	2022
EcoT14I	CCWWGG	3 cut(s)	560, 2534, 2988
EcoT38I	GRGCYC	2 cut(s)	2823, 2926
ErhI	CCWWGG	3 cut(s)	560, 2534, 2988
Esp3I	CGTCTC	1 cut(s)	2768
FalI	AAGNNNNNCTT	4 cut(s)	1815, 1847, 2771, 2803
FaqI	GGGAC	5 cut(s)	100, 472, 481, 2450, 2626
FauI	CCCGC	8 cut(s)	125, 351, 450, 1163, 1418, 1750, 2586, 2602
FauNDI	CATATG	1 cut(s)	2269
FblI	GTMKAC	3 cut(s)	1028, 1702, 2949
FokI	GGATG	8 cut(s)	85, 151, 423, 617, 818, 2252, 2813, 3017
FriOI	GRGCYC	2 cut(s)	2823, 2926
FspBI	CTAG	9 cut(s)	561, 770, 1032, 1131, 1139, 1562, 1989, 2058, 2159
FspI	TGCGCA	1 cut(s)	2770
GlaI	GCGC	7 cut(s)	187, 523, 525, 539, 2487, 2592, 2770
GsaI	CCCAGC	1 cut(s)	835
GsuI	CTGGAG	2 cut(s)	32, 779
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	8 cut(s)	705, 786, 1320, 1401, 1604, 2821, 2924, 2963
HgaI	GACGC	6 cut(s)	158, 520, 1187, 2447, 2615, 2750
HhaI	GCGC	7 cut(s)	188, 524, 526, 540, 2488, 2593, 2771
Hin1I	GRCGYC	2 cut(s)	150, 512
Hin6I	GCGC	7 cut(s)	186, 522, 524, 538, 2486, 2591, 2769
HinP1I	GCGC	7 cut(s)	186, 522, 524, 538, 2486, 2591, 2769
HincII	GTYRAC	3 cut(s)	1342, 1965, 2950
HindII	GTYRAC	3 cut(s)	1342, 1965, 2950
HindIII	AAGCTT	1 cut(s)	2780
HphI	GGTGA	7 cut(s)	287, 1790, 1853, 2401, 2513, 2807, 3020
Hpy166II	GTNNAC	7 cut(s)	1029, 1342, 1580, 1703, 1781, 1965, 2950
Hpy8I	GTNNAC	7 cut(s)	1029, 1342, 1580, 1703, 1781, 1965, 2950
Hpy99I	CGWCG	6 cut(s)	407, 508, 511, 514, 2654, 2819
HpyAV	CCTTC	9 cut(s)	167, 232, 988, 1293, 1418, 1895, 2181, 2216, 2974
HpyCH4III	ACNGT	5 cut(s)	1269, 1996, 2501, 2582, 2654
HpyCH4IV	ACGT	2 cut(s)	20, 402
HpySE526I	ACGT	2 cut(s)	20, 402
Hsp92I	GRCGYC	2 cut(s)	150, 512
HspAI	GCGC	7 cut(s)	186, 522, 524, 538, 2486, 2591, 2769
Kpn2I	TCCGGA	1 cut(s)	2698
KroI	GCCGGC	1 cut(s)	786
KroNI	GCCGGC	1 cut(s)	788
LguI	GCTCTTC	1 cut(s)	2256
LmnI	GCTCC	6 cut(s)	135, 435, 745, 1104, 2701, 3031
Lsp1109I	GCAGC	9 cut(s)	21, 139, 200, 527, 627, 634, 1182, 1471, 2971
LweI	GCATC	9 cut(s)	627, 1388, 1437, 1471, 1515, 1700, 2349, 2780, 2791
MaeI	CTAG	9 cut(s)	561, 770, 1032, 1131, 1139, 1562, 1989, 2058, 2159
MaeII	ACGT	2 cut(s)	20, 402
MaeIII	GTNAC	6 cut(s)	88, 2044, 2312, 2501, 2582, 3015
MbiI	CCGCTC	1 cut(s)	3026
MfeI	CAATTG	1 cut(s)	2616
MflI	RGATCY	3 cut(s)	973, 2530, 2713
MhlI	GDGCHC	4 cut(s)	2638, 2823, 2904, 2926
MlyI	GAGTC	2 cut(s)	1927, 1932
MmeI	TCCRAC	4 cut(s)	481, 527, 656, 1938
MroI	TCCGGA	1 cut(s)	2698
MroNI	GCCGGC	1 cut(s)	786
MroXI	GAANNNNTTC	2 cut(s)	1723, 2544
MseI	TTAA	9 cut(s)	104, 710, 753, 885, 1188, 1677, 2085, 2994, 3040
MslI	CAYNNNNRTG	3 cut(s)	804, 2058, 2339
MspA1I	CMGCKG	2 cut(s)	34, 1757
MunI	CAATTG	1 cut(s)	2616
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	4 cut(s)	783, 1203, 1575, 1586
MvnI	CGCG	5 cut(s)	74, 524, 2593, 2609, 2844
NaeI	GCCGGC	1 cut(s)	788
NciI	CCSGG	6 cut(s)	288, 2524, 2576, 2691, 2732, 2733
NcoI	CCATGG	1 cut(s)	2534
NdeI	CATATG	1 cut(s)	2269
NgoMIV	GCCGGC	1 cut(s)	786
NlaIV	GGNNCC	4 cut(s)	999, 2532, 2821, 2924
NmuCI	GTSAC	5 cut(s)	88, 2312, 2501, 2582, 3015
NsbI	TGCGCA	1 cut(s)	2770
NspI	RCATGY	2 cut(s)	1099, 2057
PagI	TCATGA	2 cut(s)	1273, 1941
PalAI	GGCGCGCC	1 cut(s)	522
PauI	GCGCGC	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	1320
PciI	ACATGT	1 cut(s)	1095
PciSI	GCTCTTC	1 cut(s)	2256
PctI	GAATGC	1 cut(s)	904
PdiI	GCCGGC	1 cut(s)	788
PdmI	GAANNNNTTC	2 cut(s)	1723, 2544
PfeI	GAWTC	9 cut(s)	228, 595, 1135, 1719, 1816, 2006, 2155, 2252, 2695
PflMI	CCANNNNNTGG	1 cut(s)	802
PfoI	TCCNGGA	3 cut(s)	1201, 2522, 2574
PleI	GAGTC	2 cut(s)	1927, 1932
PpsI	GAGTC	2 cut(s)	1927, 1932
PpuMI	RGGWCCY	1 cut(s)	997
PscI	ACATGT	1 cut(s)	1095
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	4 cut(s)	781, 1201, 1573, 1584
PspFI	CCCAGC	1 cut(s)	831
PspGI	CCWGG	4 cut(s)	781, 1201, 1573, 1584
PspN4I	GGNNCC	4 cut(s)	999, 2532, 2821, 2924
PspOMI	GGGCCC	2 cut(s)	2819, 2922
PspPPI	RGGWCCY	1 cut(s)	997
PsrI	GAACNNNNNNTAC	2 cut(s)	44, 76
PstNI	CAGNNNCTG	1 cut(s)	540
PsuI	RGATCY	3 cut(s)	973, 2530, 2713
PteI	GCGCGC	1 cut(s)	522
RsaI	GTAC	8 cut(s)	481, 666, 686, 778, 1007, 1385, 1579, 2660
RsaNI	GTAC	8 cut(s)	480, 665, 685, 777, 1006, 1384, 1578, 2659
RseI	CAYNNNNRTG	3 cut(s)	804, 2058, 2339
SalI	GTCGAC	1 cut(s)	2948
SapI	GCTCTTC	1 cut(s)	2256
SaqAI	TTAA	9 cut(s)	104, 710, 753, 885, 1188, 1677, 2085, 2994, 3040
SchI	GAGTC	2 cut(s)	1927, 1932
SduI	GDGCHC	4 cut(s)	2638, 2823, 2904, 2926
SfaNI	GCATC	9 cut(s)	627, 1388, 1437, 1471, 1515, 1700, 2349, 2780, 2791
SfcI	CTRYAG	2 cut(s)	10, 836
SgsI	GGCGCGCC	1 cut(s)	522
SinI	GGWCC	4 cut(s)	463, 847, 997, 2875
SmaI	CCCGGG	1 cut(s)	2733
SmiMI	CAYNNNNRTG	3 cut(s)	804, 2058, 2339
SmlI	CTYRAG	1 cut(s)	1469
SmoI	CTYRAG	1 cut(s)	1469
SpeI	ACTAGT	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	1320
SspI	AATATT	1 cut(s)	2105
SspMI	CTAG	9 cut(s)	561, 770, 1032, 1131, 1139, 1562, 1989, 2058, 2159
StuI	AGGCCT	1 cut(s)	1320
StyI	CCWWGG	3 cut(s)	560, 2534, 2988
TaaI	ACNGT	5 cut(s)	1269, 1996, 2501, 2582, 2654
TaiI	ACGT	2 cut(s)	23, 405
TaqI	TCGA	8 cut(s)	255, 405, 1298, 1664, 1936, 2278, 2649, 2949
TatI	WGTACW	2 cut(s)	664, 776
TauI	GCSGC	7 cut(s)	138, 283, 398, 529, 2847, 2862, 2865
TfiI	GAWTC	9 cut(s)	228, 595, 1135, 1719, 1816, 2006, 2155, 2252, 2695
Tru1I	TTAA	9 cut(s)	104, 710, 753, 885, 1188, 1677, 2085, 2994, 3040
Tru9I	TTAA	9 cut(s)	104, 710, 753, 885, 1188, 1677, 2085, 2994, 3040
TscAI	CASTG	7 cut(s)	97, 900, 1018, 1083, 1508, 1542, 2587
TseFI	GTSAC	5 cut(s)	88, 2312, 2501, 2582, 3015
TseI	GCWGC	9 cut(s)	34, 127, 188, 540, 615, 647, 1195, 1484, 2984
Tsp45I	GTSAC	5 cut(s)	88, 2312, 2501, 2582, 3015
TspGWI	ACGGA	4 cut(s)	422, 1712, 1821, 2676
TspMI	CCCGGG	1 cut(s)	2731
TspRI	CASTG	7 cut(s)	97, 900, 1018, 1083, 1508, 1542, 2587
Van91I	CCANNNNNTGG	1 cut(s)	802
VpaK11BI	GGWCC	4 cut(s)	463, 847, 997, 2875
XagI	CCTNNNNNAGG	3 cut(s)	854, 2287, 2524
XapI	RAATTY	6 cut(s)	817, 1126, 1169, 1650, 1682, 2345
XbaI	TCTAGA	1 cut(s)	2158
XceI	RCATGY	2 cut(s)	1099, 2057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2834
XmaI	CCCGGG	1 cut(s)	2731
XmaJI	CCTAGG	1 cut(s)	560
XmiI	GTMKAC	3 cut(s)	1028, 1702, 2949
XmnI	GAANNNNTTC	2 cut(s)	1723, 2544
XspI	CTAG	9 cut(s)	561, 770, 1032, 1131, 1139, 1562, 1989, 2058, 2159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.