Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191210.1

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Forward (+)

286 .. 699

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgagaaaaccaccgaaatctaagaaggcccgcaagcagaagcgggagtcggaggtcgaagaaatcaaggttctaaattcatggatcgaatcccagaaaccagactgcgggtccaatcccatgtctctcccacctttaccaacaaaatcacccattggccgcctggactccacacccaccttttctcgctatgctggcaccaccagcttccatcagttgccgatttccaagaggaccaaggacgccttgcgccgagctaacttcacccacatgaccgatatccagagggcgtctttgcctcacgcgctctgcggcagagatattctcggtgccgccaagactggctccggcaagactctggcttttgtaataccggtaggttatgcatgggtgtgcatgtctttttcatgggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

138

Amino Acids

15.36

Weight (kDa)

10.18

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 329
AccII	CGCG	1 cut(s)	305
AciI	CCGC	6 cut(s)	31, 43, 108, 160, 312, 333
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	2 cut(s)	243, 290
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	373
AhdI	GACNNNNNGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	207, 257
AluI	AGCT	2 cut(s)	207, 257
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	27, 157
ApoI	RAATTY	1 cut(s)	76
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	252, 307
AspS9I	GGNCC	3 cut(s)	28, 111, 234
AsuHPI	GGTGA	2 cut(s)	141, 256
AvaII	GGWCC	2 cut(s)	111, 234
BanI	GGYRCC	2 cut(s)	197, 329
BccI	CCATC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	3 cut(s)	160, 313, 333
BlsI	GCNGC	3 cut(s)	161, 314, 334
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	111, 234
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	28, 111, 234
BmiI	GGNNCC	4 cut(s)	112, 199, 331, 346
BmrFI	CCNGG	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BsaHI	GRCGYC	2 cut(s)	243, 290
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	29, 159
BshNI	GGYRCC	2 cut(s)	197, 329
BshTI	ACCGGT	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	348, 374
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	29, 159
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	6 cut(s)	31, 43, 108, 160, 312, 333
BspANI	GGCC	2 cut(s)	29, 159
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	4 cut(s)	112, 199, 331, 346
BspPI	GGATC	1 cut(s)	92
BspT107I	GGYRCC	2 cut(s)	197, 329
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	2 cut(s)	243, 290
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	243, 290
BstC8I	GCNNGC	3 cut(s)	31, 35, 196
BstDEI	CTNAG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	252, 307
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	29, 159
Cac8I	GCNNGC	3 cut(s)	31, 35, 196
CfoI	GCGC	2 cut(s)	252, 307
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	28, 111, 234
CseI	GACGC	2 cut(s)	251, 279
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	6 cut(s)	81, 121, 271, 387, 397, 408
CviJI	RGCY	6 cut(s)	29, 159, 207, 257, 345, 362
CviKI_1	RGCY	6 cut(s)	29, 159, 207, 257, 345, 362
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	111, 234
EcoRII	CCWGG	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	6 cut(s)	84, 124, 274, 390, 400, 411
FaiI	YATR	8 cut(s)	82, 122, 192, 272, 384, 388, 398, 409
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	6 cut(s)	80, 120, 270, 386, 396, 407
FauI	CCCGC	3 cut(s)	36, 38, 101
Fnu4HI	GCNGC	3 cut(s)	160, 313, 333
Fsp4HI	GCNGC	3 cut(s)	160, 313, 333
GlaI	GCGC	2 cut(s)	251, 306
GluI	GCNGC	3 cut(s)	160, 313, 333
HaeIII	GGCC	2 cut(s)	29, 159
HapII	CCGG	2 cut(s)	348, 374
HgaI	GACGC	2 cut(s)	251, 279
HhaI	GCGC	2 cut(s)	252, 307
Hin1I	GRCGYC	2 cut(s)	243, 290
Hin1II	CATG	6 cut(s)	84, 124, 274, 390, 400, 411
Hin6I	GCGC	2 cut(s)	250, 305
HinP1I	GCGC	2 cut(s)	250, 305
HinfI	GANTC	4 cut(s)	47, 89, 167, 355
HpaII	CCGG	2 cut(s)	348, 374
HphI	GGTGA	2 cut(s)	141, 256
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	386, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
HpyF3I	CTNAG	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	243, 290
Hsp92II	CATG	6 cut(s)	84, 124, 274, 390, 400, 411
HspAI	GCGC	2 cut(s)	250, 305
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	350
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	71
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	3 cut(s)	56, 161, 349
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	46, 225, 279, 309
Mph1103I	ATGCAT	1 cut(s)	388
MslI	CAYNNNNRTG	2 cut(s)	269, 391
MspI	CCGG	2 cut(s)	348, 374
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	6 cut(s)	84, 124, 274, 390, 400, 411
NlaIV	GGNNCC	4 cut(s)	112, 199, 331, 346
NmeAIII	GCCGAG	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	161, 314, 334
PleI	GAGTC	3 cut(s)	55, 161, 349
PpsI	GAGTC	3 cut(s)	55, 161, 349
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	4 cut(s)	112, 199, 331, 346
PspPI	GGNCC	3 cut(s)	28, 111, 234
RseI	CAYNNNNRTG	2 cut(s)	269, 391
SatI	GCNGC	3 cut(s)	160, 313, 333
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	28, 111, 234
SchI	GAGTC	3 cut(s)	56, 161, 349
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	7 cut(s)	57, 72, 136, 182, 209, 259, 382
SinI	GGWCC	2 cut(s)	111, 234
SmiMI	CAYNNNNRTG	2 cut(s)	269, 391
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	6 cut(s)	31, 43, 108, 160, 312, 333
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	2 cut(s)	57, 87
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	76
TauI	GCSGC	3 cut(s)	162, 315, 335
TfiI	GAWTC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	69, 396
VpaK11BI	GGWCC	2 cut(s)	111, 234
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.