Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Reverse (-)

1348880 .. 1350411

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCTCAGTGATGCAAGTTTTAAGCCGGCGGTGGAGTTAATCATTAAAGATCTACCTAAGGATAGGCAAATTTTTCTCTTTTCAGCAACTCATCCAAAAGATGTTAAGGATCTTGCAACTCTCTGTTTGAAAGATCCAGAGTTCGTCAGTGTGCATGAGAAGTCTGTAACAGCCACTCCTACTAATTTGCAGCAAACATATATCATCGTTCCTCTTCACCGAAAGTTAGACATGTTGTGGGGTTTCATAAGAAGTAACTTAAAATCTAGGATTCTAGTGTTTCTATCAACCAGAAAACAGGTAGAATTTGTATACAAAGCATTTGCAAAACTCCGACCCGGAATACCTCTGAAGCGTATTCATGGTAAGAGGAAGCAAGAGGAAAGAATGGAAACAGTCTCACAGTTTAGTAAGAACCCTATAGTTCTTTTTTCGACTGATGTGGCTTCAAGAGGCCTTGACTTCGACCAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCAGAAGATGTTGCATCTTACATACACCGAGTTGGTCGAACTGCTCGCTTTGATTCTATAGGGAGATCGCTTTTATTTCTGATGCCGTCTGAAGAAAAAATGCTTGATAAACTACAAGCAGCAAAAATACCCATTCGGGAAAAAAAGCCTAACAAGGACCTTGTGCAATCACTGTCTAAATTGTTGGCATCTAAGATAGTCCAGGACCCTGATCTACTACGTGATGTGGCTAATAGGGCCGTTATCACATATGTAAAGTCTGTTAAAAAACAGAAGGACAAAGAGATTTTCGACGTTAAAGAATTACCAATTGATGAGTTTTCCAAATCGATAGGTCTATCGTTCCCACCCAGAATGCGTTTTCTAAACAACGAAATCAATAATTCCTCTAAGAAAGTGTCCGAACTATCTCCCATTGTTGAACCAGAAAATTTGGACAAGGACAATGAATTGGAGCTGCTTCCTAAGGAGGAGCTTGATATCAGTGATTCTGGTGAAGAAGATGGGGAGAAAGATCCTTTTCATACAAATGATACAGCAAATGCCGCAGACTGGGAAGGAAGAAAAATCGAACATACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

362

Amino Acids

41.27

Weight (kDa)

7.07

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	29, 1047
AclWI	GGATC	3 cut(s)	117, 128, 1010
AcsI	RAATTY	3 cut(s)	69, 305, 931
AcuI	CTGAAG	2 cut(s)	371, 612
AfiI	CCNNNNNNNGG	1 cut(s)	1053
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	130, 450, 923
AjnI	CCWGG	2 cut(s)	468, 702
AluBI	AGCT	2 cut(s)	958, 976
AluI	AGCT	2 cut(s)	958, 976
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	3 cut(s)	117, 128, 1010
AoxI	GGCC	2 cut(s)	454, 738
ApeKI	GCWGC	3 cut(s)	190, 620, 958
ApoI	RAATTY	3 cut(s)	69, 305, 931
AspS9I	GGNCC	3 cut(s)	658, 706, 738
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	209, 1007
AvaII	GGWCC	2 cut(s)	658, 706
AxyI	CCTNAGG	2 cut(s)	57, 966
BbvI	GCAGC	3 cut(s)	202, 632, 945
BccI	CCATC	1 cut(s)	998
BceAI	ACGGC	2 cut(s)	571, 725
BciT130I	CCWGG	2 cut(s)	470, 704
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	267, 275
BfmI	CTRYAG	2 cut(s)	420, 558
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	191, 621, 959, 1047
BlsI	GCNGC	4 cut(s)	192, 622, 960, 1048
Bme1390I	CCNGG	3 cut(s)	339, 470, 704
Bme18I	GGWCC	2 cut(s)	658, 706
BmgT120I	GGNCC	3 cut(s)	658, 706, 738
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	3 cut(s)	339, 470, 704
BmrI	ACTGGG	2 cut(s)	490, 1063
BmsI	GCATC	3 cut(s)	524, 573, 698
BmuI	ACTGGG	2 cut(s)	490, 1063
BpuMI	CCSGG	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	830
BsaAI	YACGTR	1 cut(s)	722
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	1053
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	485, 1058
Bse21I	CCTNAGG	2 cut(s)	57, 966
BseBI	CCWGG	2 cut(s)	470, 704
BseCI	ATCGAT	1 cut(s)	830
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	1053
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	485, 1058
BseRI	GAGGAG	1 cut(s)	986
BseXI	GCAGC	3 cut(s)	202, 632, 945
BshFI	GGCC	2 cut(s)	456, 740
BshVI	ATCGAT	1 cut(s)	830
BsiSI	CCGG	2 cut(s)	26, 339
BslI	CCNNNNNNNGG	1 cut(s)	1053
BsmAI	GTCTC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	861
BsnI	GGCC	2 cut(s)	456, 740
Bsp143I	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
BspACI	CCGC	2 cut(s)	29, 1047
BspANI	GGCC	2 cut(s)	456, 740
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	830
BspLI	GGNNCC	1 cut(s)	708
BspPI	GGATC	3 cut(s)	117, 128, 1010
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	485, 1058
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
BssNAI	GTATAC	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	470, 704
Bst4CI	ACNGT	3 cut(s)	397, 405, 675
Bst6I	CTCTTC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	27, 547
BstDEI	CTNAG	5 cut(s)	5, 57, 693, 891, 966
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	6 cut(s)	52, 112, 136, 569, 715, 1018
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 1046
BstNI	CCWGG	2 cut(s)	470, 704
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	3 cut(s)	337, 468, 702
BstSFI	CTRYAG	2 cut(s)	420, 558
BstV1I	GCAGC	3 cut(s)	202, 632, 945
BstX2I	RGATCY	4 cut(s)	49, 109, 133, 1015
BstYI	RGATCY	4 cut(s)	49, 109, 133, 1015
BstZ17I	GTATAC	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	830
Bsu36I	CCTNAGG	2 cut(s)	57, 966
BsuRI	GGCC	2 cut(s)	456, 740
BsuTUI	ATCGAT	1 cut(s)	830
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	4 cut(s)	13, 154, 671, 991
Cac8I	GCNNGC	2 cut(s)	27, 547
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	658, 706, 738
ClaI	ATCGAT	1 cut(s)	830
CviAII	CATG	3 cut(s)	155, 232, 362
CviJI	RGCY	9 cut(s)	25, 173, 446, 456, 649, 731, 740, 958, 976
CviKI_1	RGCY	9 cut(s)	25, 173, 446, 456, 649, 731, 740, 958, 976
DdeI	CTNAG	5 cut(s)	5, 57, 693, 891, 966
DpnI	GATC	6 cut(s)	51, 111, 135, 568, 714, 1017
DpnII	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	658, 706
Eco57I	CTGAAG	2 cut(s)	371, 612
Eco81I	CCTNAGG	2 cut(s)	57, 966
EcoO109I	RGGNCCY	2 cut(s)	658, 706
EcoRII	CCWGG	2 cut(s)	468, 702
EcoRV	GATATC	1 cut(s)	982
FaeI	CATG	3 cut(s)	158, 235, 365
FatI	CATG	3 cut(s)	154, 231, 361
FauNDI	CATATG	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	191, 621, 959, 1047
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	191, 621, 959, 1047
FspBI	CTAG	2 cut(s)	267, 275
GluI	GCNGC	4 cut(s)	191, 621, 959, 1047
HaeIII	GGCC	2 cut(s)	456, 740
HapII	CCGG	2 cut(s)	26, 339
Hin1II	CATG	3 cut(s)	158, 235, 365
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	3 cut(s)	271, 554, 989
HpaII	CCGG	2 cut(s)	26, 339
HphI	GGTGA	2 cut(s)	209, 1007
Hpy166II	GTNNAC	2 cut(s)	313, 478
Hpy188I	TCNGA	5 cut(s)	335, 351, 582, 592, 904
Hpy188III	TCNNGA	4 cut(s)	137, 450, 503, 638
Hpy8I	GTNNAC	2 cut(s)	313, 478
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	2 cut(s)	769, 1052
HpyCH4III	ACNGT	3 cut(s)	397, 405, 675
HpyCH4IV	ACGT	2 cut(s)	721, 795
HpyCH4V	TGCA	7 cut(s)	14, 116, 154, 190, 326, 515, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 1046
HpyF3I	CTNAG	5 cut(s)	5, 57, 693, 891, 966
HpySE526I	ACGT	2 cut(s)	721, 795
Hsp92II	CATG	3 cut(s)	158, 235, 365
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
LmnI	GCTCC	2 cut(s)	955, 973
Lsp1109I	GCAGC	3 cut(s)	202, 632, 945
LweI	GCATC	3 cut(s)	524, 573, 698
MaeI	CTAG	2 cut(s)	267, 275
MaeII	ACGT	2 cut(s)	721, 795
MaeIII	GTNAC	2 cut(s)	166, 254
MalI	GATC	6 cut(s)	51, 111, 135, 568, 714, 1017
MboI	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
MboII	GAAGA	6 cut(s)	206, 518, 605, 1010, 1013, 1074
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	4 cut(s)	49, 109, 133, 1015
MluCI	AATT	9 cut(s)	69, 184, 305, 680, 803, 810, 883, 931, 950
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	7 cut(s)	222, 357, 363, 373, 446, 898, 964
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	7 cut(s)	21, 38, 45, 105, 260, 765, 798
MslI	CAYNNNNRTG	1 cut(s)	1029
MspI	CCGG	2 cut(s)	26, 339
MspR9I	CCNGG	3 cut(s)	339, 470, 704
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	861
MvaI	CCWGG	2 cut(s)	470, 704
MwoI	GCNNNNNNNGC	2 cut(s)	737, 1046
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	158, 235, 365
NlaIV	GGNNCC	1 cut(s)	708
NspI	RCATGY	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	456
PciI	ACATGT	1 cut(s)	231
PctI	GAATGC	1 cut(s)	861
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	271, 554, 989
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	4 cut(s)	192, 622, 960, 1048
Ppu21I	YACGTR	1 cut(s)	722
PpuMI	RGGWCCY	2 cut(s)	658, 706
PscI	ACATGT	1 cut(s)	231
Psp5II	RGGWCCY	2 cut(s)	658, 706
Psp6I	CCWGG	2 cut(s)	468, 702
PspGI	CCWGG	2 cut(s)	468, 702
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	658, 706, 738
PspPPI	RGGWCCY	2 cut(s)	658, 706
PsuI	RGATCY	4 cut(s)	49, 109, 133, 1015
RseI	CAYNNNNRTG	1 cut(s)	1029
SaqAI	TTAA	7 cut(s)	21, 38, 45, 105, 260, 765, 798
SatI	GCNGC	4 cut(s)	191, 621, 959, 1047
Sau3AI	GATC	6 cut(s)	49, 109, 133, 566, 712, 1015
Sau96I	GGNCC	3 cut(s)	658, 706, 738
ScrFI	CCNGG	3 cut(s)	339, 470, 704
SfaNI	GCATC	3 cut(s)	524, 573, 698
SfcI	CTRYAG	2 cut(s)	420, 558
SinI	GGWCC	2 cut(s)	658, 706
SmiMI	CAYNNNNRTG	1 cut(s)	1029
Sse9I	AATT	9 cut(s)	69, 184, 305, 680, 803, 810, 883, 931, 950
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	2 cut(s)	29, 1047
SspMI	CTAG	2 cut(s)	267, 275
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	337, 468, 702
TaaI	ACNGT	3 cut(s)	397, 405, 675
TaiI	ACGT	2 cut(s)	724, 798
TaqI	TCGA	6 cut(s)	434, 465, 538, 792, 830, 1071
TasI	AATT	9 cut(s)	69, 184, 305, 680, 803, 810, 883, 931, 950
TauI	GCSGC	1 cut(s)	1049
TfiI	GAWTC	3 cut(s)	271, 554, 989
Tru1I	TTAA	7 cut(s)	21, 38, 45, 105, 260, 765, 798
Tru9I	TTAA	7 cut(s)	21, 38, 45, 105, 260, 765, 798
TscAI	CASTG	4 cut(s)	13, 154, 678, 991
TseI	GCWGC	3 cut(s)	190, 620, 958
TspDTI	ATGAA	4 cut(s)	235, 350, 963, 1013
TspRI	CASTG	4 cut(s)	13, 154, 678, 991
VpaK11BI	GGWCC	2 cut(s)	658, 706
XapI	RAATTY	3 cut(s)	69, 305, 931
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	267, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.