Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Reverse (-)

22088913 .. 22089547

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0130100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACTAGCTTATTCTCAAAAGGGTCTATTCTAGTCATTCTCCTTTTAGCAATTTGCTTGGTTAGTGCAGCTCAGCAATGTCGCCCAAGCGGAAGAATCAGAGGAAGGAAACCACCACCTGGACAATGTAACCAGGAGGATGACTCTGACTGCTGTAAAGCTGGAAAAATGTACCCAACCTACACTTGCTCGCCACCCATGTCTGGTAACACCCAGGCATACCTCACTCTCAACAGCTTTGAGGCAGGTGGTGATGGAGGAGGCCCATCCGAATGTGACGGCAAGTATCACAATGACAATACTCCAGTTGTTGCATTATCCACCGGATGGTACAACGGTGGATCAAGGTGCCTTAACAACATCAGCATTAGTGGTAATGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATGCTGACCATGATTATCAGCCTCCTTGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTGGGTGTATCTGAGGACAACTGGGGCGGCTTGGATATCACATGGTCCGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

186

Amino Acids

19.65

Weight (kDa)

4.58

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KWL1	PF24300	15 - 186	7.2e-67	Kiwellin-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	348
AccB7I	CCANNNNNTGG	2 cut(s)	119, 327
AciI	CCGC	2 cut(s)	90, 531
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	393
AfaI	GTAC	2 cut(s)	173, 332
AfiI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
AjnI	CCWGG	3 cut(s)	118, 132, 213
AluBI	AGCT	4 cut(s)	9, 71, 161, 237
AluI	AGCT	4 cut(s)	9, 71, 161, 237
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	262, 393
ApeKI	GCWGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	263, 549
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	549
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BalI	TGGCCA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	3 cut(s)	248, 274, 321
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	3 cut(s)	120, 134, 215
BfaI	CTAG	2 cut(s)	6, 32
BfuAI	ACCTGC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	2 cut(s)	69, 532
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	2 cut(s)	70, 533
Bme1390I	CCNGG	3 cut(s)	120, 134, 215
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	2 cut(s)	263, 549
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	3 cut(s)	120, 134, 215
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	3 cut(s)	424, 469, 544
BmuI	ACTGGG	1 cut(s)	535
BplI	GAGNNNNNCTC	4 cut(s)	128, 160, 401, 433
BpmI	CTGGAG	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	213, 396, 486, 504
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 203, 327
Bse1I	ACTGG	2 cut(s)	305, 530
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	120, 134, 215
BseDI	CCNNGG	4 cut(s)	213, 396, 486, 504
BseGI	GGATG	5 cut(s)	145, 266, 332, 412, 434
BseLI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	86, 414, 507
BseNI	ACTGG	2 cut(s)	305, 530
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	264, 395
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	119, 203, 327
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	264, 395
Bsp143I	GATC	1 cut(s)	341
Bsp1720I	GCTNAGC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	90, 531
BspANI	GGCC	2 cut(s)	264, 395
BspCNI	CTCAG	3 cut(s)	85, 415, 508
BspLI	GGNNCC	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	305, 530
BssECI	CCNNGG	4 cut(s)	213, 396, 486, 504
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	3 cut(s)	396, 486, 504
Bst2UI	CCWGG	3 cut(s)	120, 134, 215
Bst4CI	ACNGT	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	4 cut(s)	72, 423, 516, 558
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	145, 266, 332, 412, 434
BstKTI	GATC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	3 cut(s)	120, 134, 215
BstSCI	CCNGG	3 cut(s)	118, 132, 213
BstV1I	GCAGC	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	264, 395
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	5 cut(s)	145, 266, 332, 412, 434
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	263, 549
Csp6I	GTAC	2 cut(s)	172, 331
CviAII	CATG	4 cut(s)	199, 397, 443, 546
CviQI	GTAC	2 cut(s)	172, 331
DdeI	CTNAG	4 cut(s)	72, 423, 516, 558
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	393
Eco130I	CCWWGG	3 cut(s)	396, 486, 504
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	118, 132, 213
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	3 cut(s)	396, 486, 504
ErhI	CCWWGG	3 cut(s)	396, 486, 504
FaeI	CATG	4 cut(s)	202, 400, 446, 549
FaiI	YATR	5 cut(s)	200, 220, 398, 444, 547
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	4 cut(s)	198, 396, 442, 545
Fnu4HI	GCNGC	2 cut(s)	69, 532
FokI	GGATG	5 cut(s)	152, 253, 339, 419, 441
Fsp4HI	GCNGC	2 cut(s)	69, 532
FspBI	CTAG	2 cut(s)	6, 32
GluI	GCNGC	2 cut(s)	69, 532
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	264, 395
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	4 cut(s)	202, 400, 446, 549
HinfI	GANTC	3 cut(s)	96, 143, 416
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	101, 148, 271, 517, 553
Hpy188III	TCNNGA	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	2 cut(s)	68, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	4 cut(s)	72, 423, 516, 558
Hsp92II	CATG	4 cut(s)	202, 400, 446, 549
Kzo9I	GATC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	3 cut(s)	424, 469, 544
MaeI	CTAG	2 cut(s)	6, 32
MaeIII	GTNAC	4 cut(s)	128, 206, 275, 413
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	137, 410
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	271, 401
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	120, 134, 215
MvaI	CCWGG	3 cut(s)	120, 134, 215
MwoI	GCNNNNNNNGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	202, 400, 446, 549
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	2 cut(s)	275, 413
PaqCI	CACCTGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	2 cut(s)	119, 327
PkrI	GCNGC	2 cut(s)	70, 533
PleI	GAGTC	2 cut(s)	137, 410
PpsI	GAGTC	2 cut(s)	137, 410
Psp6I	CCWGG	3 cut(s)	118, 132, 213
PspGI	CCWGG	3 cut(s)	118, 132, 213
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	263, 549
RsaI	GTAC	2 cut(s)	173, 332
RsaNI	GTAC	2 cut(s)	172, 331
RseI	CAYNNNNRTG	2 cut(s)	271, 401
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	69, 532
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	2 cut(s)	263, 549
SchI	GAGTC	2 cut(s)	137, 410
ScrFI	CCNGG	3 cut(s)	120, 134, 215
SetI	ASST	9 cut(s)	11, 73, 121, 163, 182, 225, 239, 250, 350
SfaNI	GCATC	3 cut(s)	424, 469, 544
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	2 cut(s)	271, 401
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	90, 531
SspMI	CTAG	2 cut(s)	6, 32
StyD4I	CCNGG	3 cut(s)	118, 132, 213
StyI	CCWWGG	3 cut(s)	396, 486, 504
TaaI	ACNGT	1 cut(s)	338
TasI	AATT	1 cut(s)	51
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	275, 413
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	275, 413
Van91I	CCANNNNNTGG	2 cut(s)	119, 327
VpaK11BI	GGWCC	1 cut(s)	549
XspI	CTAG	2 cut(s)	6, 32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.