Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Reverse (-)

1350661 .. 1351574

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGAAAACTCAAATCAAAGAAATATCGTATCAAAAAGAAACTCTCGGAGGAGCTCCAAGAAATCGAGCTTATGAAATCGTGGATCGAATCCCAGCAACCCGAACGCGGCTCCAACCCCATGTCTCTTCCCGATTTGCCCTCAGACGCCCCTCCCGGTCGCGTTGGCAACCCCAACCTCTTTTCGCGGTACGCCGGCGCCACTAGGTTCGAGCAGCTGCCCATCTCCAAGAAGACTAAGGACGCCTTACGCCAATCCAAGTACGTTGTAATGACCGATATTCAAAGGGCCGCTTTGCCCCATGCCCTATGCGGCAGAGATGTTCGCGGTGCCTCCAAGACTGGATCCGGGAAGACCCTAGCTTTCGTTATACCGCTTTTGGAAAAATTGTATAGAGAGAGATGGTGTCGTGACGATGGTGTGGGTGTTATCGTACTATCTCCAACAAGGGAATTAGCCATTCAAACTTTTCTTGTGTTGAATTCGGTTGGGAGGCACCATGATTTTAGTGCTGGTCTTCTAATCGGGGGTCGAAAAGGAGTCAAAGAAGAGAAGGAGCGTGCAAATAAGCTCAACATATTGGTTTGCACGCCTGGCCGGCTTCTTCAGCACATGAATGAGACTGAACATTTTTTCTGTTCACAGCTTCAGGTTTATTTTATCTTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

224

Amino Acids

25.34

Weight (kDa)

9.78

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	92 - 217	3.9e-27	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	197, 329, 495
AccII	CGCG	4 cut(s)	108, 162, 187, 327
AciI	CCGC	6 cut(s)	108, 187, 291, 312, 327, 374
AclWI	GGATC	3 cut(s)	92, 339, 352
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	590, 632
AcyI	GRCGYC	3 cut(s)	147, 198, 243
AfaI	GTAC	3 cut(s)	191, 263, 435
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	284, 464, 481
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	6 cut(s)	55, 70, 217, 362, 571, 646
AluI	AGCT	6 cut(s)	55, 70, 217, 362, 571, 646
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	129, 614
AlwI	GGATC	3 cut(s)	92, 339, 352
AoxI	GGCC	2 cut(s)	288, 595
ApeKI	GCWGC	2 cut(s)	214, 217
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	2 cut(s)	156, 349
BamHI	GGATCC	1 cut(s)	344
BanI	GGYRCC	3 cut(s)	197, 329, 495
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	3 cut(s)	239, 359, 509
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	204, 226
BccI	CCATC	3 cut(s)	230, 396, 410
BciT130I	CCWGG	1 cut(s)	594
BcnI	CCSGG	2 cut(s)	156, 349
BcoDI	GTCTC	2 cut(s)	129, 614
BfaI	CTAG	2 cut(s)	204, 359
BfoI	RGCGCY	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	5 cut(s)	109, 215, 218, 291, 313
BlsI	GCNGC	5 cut(s)	110, 216, 219, 292, 314
Bme1390I	CCNGG	3 cut(s)	156, 349, 594
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	5 cut(s)	112, 199, 331, 346, 497
BmrFI	CCNGG	3 cut(s)	156, 349, 594
BpiI	GAAGAC	3 cut(s)	239, 359, 509
BpuMI	CCSGG	2 cut(s)	156, 349
BsaHI	GRCGYC	3 cut(s)	147, 198, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	2 cut(s)	194, 597
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	204, 226
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	4 cut(s)	108, 162, 187, 327
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	290, 597
BshNI	GGYRCC	3 cut(s)	197, 329, 495
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	156, 195, 348, 598
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	2 cut(s)	129, 614
BsnI	GGCC	2 cut(s)	290, 597
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	84, 344
BspACI	CCGC	6 cut(s)	108, 187, 291, 312, 327, 374
BspANI	GGCC	2 cut(s)	290, 597
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	4 cut(s)	108, 162, 187, 327
BspLI	GGNNCC	5 cut(s)	112, 199, 331, 346, 497
BspPI	GGATC	3 cut(s)	92, 339, 352
BspT107I	GGYRCC	3 cut(s)	197, 329, 495
BsrFI	RCCGGY	2 cut(s)	194, 597
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	2 cut(s)	194, 597
BssMI	GATC	2 cut(s)	84, 344
BssNI	GRCGYC	3 cut(s)	147, 198, 243
Bst2UI	CCWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	132, 543
BstACI	GRCGYC	3 cut(s)	147, 198, 243
BstC8I	GCNNGC	4 cut(s)	196, 561, 590, 599
BstDEI	CTNAG	2 cut(s)	142, 237
BstFNI	CGCG	4 cut(s)	108, 162, 187, 327
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	87, 347
BstMAI	GTCTC	2 cut(s)	129, 614
BstMBI	GATC	2 cut(s)	84, 344
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	594, 598, 607
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	3 cut(s)	154, 347, 592
BstUI	CGCG	4 cut(s)	108, 162, 187, 327
BstV1I	GCAGC	2 cut(s)	204, 226
BstV2I	GAAGAC	3 cut(s)	239, 359, 509
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	290, 597
Cac8I	GCNNGC	4 cut(s)	196, 561, 590, 599
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	2 cut(s)	194, 597
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	2 cut(s)	155, 251
Csp6I	GTAC	3 cut(s)	190, 262, 434
CviAII	CATG	4 cut(s)	121, 302, 500, 613
CviQI	GTAC	3 cut(s)	190, 262, 434
DdeI	CTNAG	2 cut(s)	142, 237
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	2 cut(s)	86, 346
DpnII	GATC	2 cut(s)	84, 344
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	132, 543
EarI	CTCTTC	2 cut(s)	132, 543
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	590, 632
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	4 cut(s)	124, 305, 503, 616
FaiI	YATR	9 cut(s)	74, 122, 303, 310, 371, 393, 501, 578, 614
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 277, 309
FatI	CATG	4 cut(s)	120, 301, 499, 612
Fnu4HI	GCNGC	5 cut(s)	109, 215, 218, 291, 313
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	109, 215, 218, 291, 313
FspBI	CTAG	2 cut(s)	204, 359
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	5 cut(s)	109, 215, 218, 291, 313
GsaI	CCCAGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	290, 597
HapII	CCGG	4 cut(s)	156, 195, 348, 598
HgaI	GACGC	2 cut(s)	155, 251
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	3 cut(s)	147, 198, 243
Hin1II	CATG	4 cut(s)	124, 305, 503, 616
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	2 cut(s)	89, 540
HpaII	CCGG	4 cut(s)	156, 195, 348, 598
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	2 cut(s)	49, 145
Hpy188III	TCNNGA	2 cut(s)	131, 410
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	563, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	594, 598, 607
HpyF3I	CTNAG	2 cut(s)	142, 237
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	3 cut(s)	147, 198, 243
Hsp92II	CATG	4 cut(s)	124, 305, 503, 616
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	2 cut(s)	194, 597
KroNI	GCCGGC	2 cut(s)	196, 599
Kzo9I	GATC	2 cut(s)	84, 344
LmnI	GCTCC	4 cut(s)	52, 60, 116, 556
Lsp1109I	GCAGC	2 cut(s)	204, 226
MaeI	CTAG	2 cut(s)	204, 359
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	86, 346
MboI	GATC	2 cut(s)	84, 344
MboII	GAAGA	7 cut(s)	119, 244, 364, 509, 560, 596, 655
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	386, 452, 481
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	2 cut(s)	138, 467
MnlI	CCTC	6 cut(s)	43, 151, 162, 188, 343, 486
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	2 cut(s)	194, 597
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	4 cut(s)	156, 195, 348, 598
MspR9I	CCNGG	3 cut(s)	156, 349, 594
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	4 cut(s)	108, 162, 187, 327
MwoI	GCNNNNNNNGC	3 cut(s)	594, 598, 607
NaeI	GCCGGC	2 cut(s)	196, 599
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	156, 349
NdeII	GATC	2 cut(s)	84, 344
NgoMIV	GCCGGC	2 cut(s)	194, 597
NlaIII	CATG	4 cut(s)	124, 305, 503, 616
NlaIV	GGNNCC	5 cut(s)	112, 199, 331, 346, 497
NmuCI	GTSAC	1 cut(s)	410
PdiI	GCCGGC	2 cut(s)	196, 599
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	110, 216, 219, 292, 314
PleI	GAGTC	1 cut(s)	548
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	5 cut(s)	112, 199, 331, 346, 497
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	191, 263, 435
RsaNI	GTAC	3 cut(s)	190, 262, 434
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	5 cut(s)	109, 215, 218, 291, 313
Sau3AI	GATC	2 cut(s)	84, 344
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	3 cut(s)	156, 349, 594
SduI	GDGCHC	1 cut(s)	57
SfoI	GGCGCC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	3 cut(s)	386, 452, 481
SsiI	CCGC	6 cut(s)	108, 187, 291, 312, 327, 374
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	204, 359
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	154, 347, 592
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	4 cut(s)	66, 87, 210, 532
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	386, 452, 481
TauI	GCSGC	3 cut(s)	111, 293, 315
TfiI	GAWTC	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	214, 217
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	89, 629
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	2 cut(s)	204, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.