Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Reverse (-)

39303602 .. 39308951

Gene Structure 5350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGAGAAAACCACCGAAATCTAAGAAGGTCCGAAAGCAGAAGCGGGAATCGGAGGTTGAAGAAATCAAGGTTCTAAATTCATGGATCGAATCCCAGAAACCCGACTGCGGCTCCAATCCCATGTCTCTCCCACCTTTACCCACAAAATCACCCATTGGCCGCCTGGACTCCACACCCACCTTTTCTCGCTACGCTGGCACCACCAGCTTCCATCAGTTGCCGATTTCCAAGAGGACCAAGGACGCCTTGCGCCGAGCTAACTTCACCCACATGACCGATATCCAGAGGGCGTCTTTGCCTCACGCGCTCTGCGGCAGAGATATTCTCGGTGCCGCCAAGACTGGCTCCGGCAAGACTCTGGCTTTTGTAATACCGGTTCTAGAAAAATTACATAGGGAGAGATGGAATCCTGAGGATGGGGTAGGCAGCATCATAATATCTCCGACAAGGGAATTAGCTGCTCAAACTTTTGATGTATTAAAATGGGTTGGCAAGTATCATAATTTTAGTGCTGGCCTCTTAATTGGTGGTCGCAAAGATGTTCAAGTGGAAAAGGAGCGTGTTAATGGTCTCAACATACTAATCTGTACTCCTGGCCGTCTTCTTCAGCACATGGATGAGACACCAAATTTTGATTGTTCCCAGCTACAGGTTTTGGTCCTTGATGAGGCAGATCGTATTCTTGATGTGGGATTTAAAAAGACACTGAATGCGGTCATCTCACAGCTACCTAAGAGAAGACAAACTCTTCTCTTCTCAGCAACTCAAACAAAGTCGGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTACCTCAGTGTGCATGAGAAGTCCACTAGAGCCACTCCCAATCATTTACAGCAAACAGCAGTCATTGTTCCACTGGATCAGAAAATAGACATGTTGTGGAGCTTCATAAAGGCACATCTAAATTCTAGGATTCTAGTGTTTCTATCAACCCGCAAGCAGGTAAAATTTGTCTTTGAAGCATTTAAAAAGCTGCGTCCTGGAATACCCTTGAAGTGTCTTCATGGTAAGATGAAGCAAGAGGGAAGAATGGGAACATACTCACAGTTTCATGAAAAACCTTCAGTTCTCTTCTCGACTGATGTGGCTTCAAGAGGCCTTGACTTCAACAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCAGAAGATGTTGCAGCGTACATACACAGAGTTGGGCGAACTGCCCGCTATCATTCTGAAGGGCGATCTGTTTTATTTCTGATGCCCTCAGAACTGAAAATGCTTAAGAAATTAAATGCTGCAAGAATACCCATTCAGCTCATCAAGGCTAACAACAAAAGGCATCAACCAGTGTCTCCATTGTTGTCATCATTGCTAGTCAAGTATCCTGATACACTCGTGGGTCTGGCAAAAAGGGCCTTTATCACTTACTTGAAGTCCATTCAAAATCACAAGGACAAAGAAATTTTTAATGTGTCGGAACTGCCACTTAATGAATTTTCAGCATCTATGGGTCTACCAATGACCCCCAGAATCCGTTTTCCAAATCAGAAAATGAAGTCCAAGACAGCAGGAGAACTATATCCTATTGGTGAATCAGAAAGTTCTGACATGGGGAACGGATTAGAGATTCCCAAAGAGGAACTTGATATTGGTGATTTGAACGAGGGGGAAGTGGATAACGATGTTCTTCTAACAAATGAGGGAACAGAGGAAGGAACAAAAATTGGAGATAATTTGCCAGCGACTCGAGTCATGAAGAAAAGGAAGTTGAAATTGACTATCTATAGACCTATGGGAACTAGGCGAGTCTTTGATGATTCGTGCAACTCGATATCGCCCTTTGCAAAGATGGCTGGTACCATACATGCTAGTGATCCCATATTGCTTGATGAACTTAAAGACAAGAAACACAAATATTATGATAAGGTTAGGGAAGAGTTGAAGAGATCAGAACCAGAAGACAAGATTCTAGACCGCCAGCGTTGCAATGAAAAACGAAGGAAAGAGAAGATGAAGAGGAGTAGAGTGAATGAAGGAGAAGAGGAACAGGATGATCTTTCTGATTCCAAAGAAGAGCCATATGAGGGAGGAATCCACACTATCTTTTGCAATCTGCACTCCCTCGTATTTGCAATGTTCTTGACGGGTTGTGTTATAATTTATCCCAAAATGCTCAATCCTCATCTCCTTATTCCCAGATTAAGTCCTGAGATACCGTGTCTTGCACATAAGAATGAATGGGTTTATGAATTACTGGCATTGAGTAATGACTACACTAAAAATATTCATGTCGACCCAGACAAGGAAAAAGTGGACATCCTCAGACTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

777

Amino Acids

88.27

Weight (kDa)

9.33

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	92 - 263	3e-44	DEAD/DEAH box helicase
ResIII	PF04851	111 - 255	9.2e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	300 - 409	3.2e-23	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	468 - 511	2.7e-12	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2156
Acc36I	ACCTGC	1 cut(s)	964
Acc65I	GGTACC	1 cut(s)	1856
AccB1I	GGYRCC	3 cut(s)	197, 329, 1856
AccI	GTMKAC	2 cut(s)	1513, 2292
AccII	CGCG	1 cut(s)	305
AciI	CCGC	9 cut(s)	43, 108, 160, 312, 333, 713, 967, 1222, 1975
AclWI	GGATC	3 cut(s)	92, 900, 1868
AcoI	YGGCCR	2 cut(s)	157, 595
AcsI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
AcuI	CTGAAG	3 cut(s)	590, 1080, 1254
AcyI	GRCGYC	2 cut(s)	243, 290
AfaI	GTAC	4 cut(s)	589, 818, 1196, 1858
AfiI	CCNNNNNNNGG	7 cut(s)	107, 416, 649, 667, 973, 2084, 2302
AflII	CTTAAG	1 cut(s)	1280
AflIII	ACRYGT	1 cut(s)	906
AgeI	ACCGGT	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	162, 592, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	1632, 1664
AluBI	AGCT	8 cut(s)	207, 257, 458, 646, 727, 918, 1006, 1315
AluI	AGCT	8 cut(s)	207, 257, 458, 646, 727, 918, 1006, 1315
Alw26I	GTCTC	4 cut(s)	129, 575, 614, 1356
AlwI	GGATC	3 cut(s)	92, 900, 1868
Ama87I	CYCGRG	1 cut(s)	1746
AoxI	GGCC	5 cut(s)	157, 514, 595, 1129, 1413
ApeKI	GCWGC	5 cut(s)	426, 458, 1006, 1190, 1295
ApoI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
AsiGI	ACCGGT	1 cut(s)	373
Asp718I	GGTACC	1 cut(s)	1856
AspLEI	GCGC	2 cut(s)	252, 307
AspS9I	GGNCC	5 cut(s)	28, 234, 658, 808, 1413
AsuHPI	GGTGA	4 cut(s)	141, 256, 1601, 1664
AvaI	CYCGRG	1 cut(s)	1746
AvaII	GGWCC	4 cut(s)	28, 234, 658, 808
AxyI	CCTNAGG	1 cut(s)	411
BaeI	ACNNNNGTAYC	2 cut(s)	1380, 1413
BanI	GGYRCC	3 cut(s)	197, 329, 1856
BauI	CACGAG	1 cut(s)	1394
BbsI	GAAGAC	4 cut(s)	593, 745, 1025, 1965
BbvI	GCAGC	5 cut(s)	438, 445, 993, 1202, 1282
BccI	CCATC	4 cut(s)	219, 396, 410, 1843
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	3 cut(s)	164, 594, 1014
BciVI	GTATCC	1 cut(s)	1392
BcoDI	GTCTC	4 cut(s)	129, 575, 614, 1356
BfaI	CTAG	8 cut(s)	380, 843, 942, 950, 1373, 1800, 1869, 1970
BfmI	CTRYAG	2 cut(s)	647, 1783
BfrI	CTTAAG	1 cut(s)	1280
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	1392
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	9 cut(s)	109, 160, 313, 333, 427, 459, 1007, 1191, 1296
BlsI	GCNGC	9 cut(s)	110, 161, 314, 334, 428, 460, 1008, 1192, 1297
Bme1390I	CCNGG	3 cut(s)	164, 594, 1014
Bme18I	GGWCC	4 cut(s)	28, 234, 658, 808
BmeT110I	CYCGRG	1 cut(s)	1746
BmgT120I	GGNCC	5 cut(s)	28, 234, 658, 808, 1413
BmiI	GGNNCC	6 cut(s)	112, 199, 331, 346, 810, 1858
BmrFI	CCNGG	3 cut(s)	164, 594, 1014
BmrI	ACTGGG	1 cut(s)	1165
BmsI	GCATC	4 cut(s)	438, 1248, 1348, 1511
BmuI	ACTGGG	1 cut(s)	1165
BoxI	GACNNNNGTC	1 cut(s)	1748
BpiI	GAAGAC	4 cut(s)	593, 745, 1025, 1965
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BsaHI	GRCGYC	2 cut(s)	243, 290
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	7 cut(s)	107, 416, 649, 667, 973, 2084, 2302
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	5 cut(s)	346, 894, 1160, 1346, 2259
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	3 cut(s)	1367, 1993, 2139
BseBI	CCWGG	3 cut(s)	164, 594, 1014
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	4 cut(s)	421, 622, 2056, 2316
BseLI	CCNNNNNNNGG	7 cut(s)	107, 416, 649, 667, 973, 2084, 2302
BseMI	GCAATG	3 cut(s)	1367, 1993, 2139
BseMII	CTCAG	5 cut(s)	402, 771, 835, 1278, 2199
BseNI	ACTGG	5 cut(s)	346, 894, 1160, 1346, 2259
BseRI	GAGGAG	1 cut(s)	2032
BseXI	GCAGC	5 cut(s)	438, 445, 993, 1202, 1282
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	2099
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	5 cut(s)	159, 516, 597, 1131, 1415
BshNI	GGYRCC	3 cut(s)	197, 329, 1856
BshTI	ACCGGT	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	1746
BsiSI	CCGG	2 cut(s)	348, 374
BslI	CCNNNNNNNGG	7 cut(s)	107, 416, 649, 667, 973, 2084, 2302
BsmAI	GTCTC	4 cut(s)	129, 575, 614, 1356
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	5 cut(s)	159, 516, 597, 1131, 1415
Bso31I	GGTCTC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	1746
Bsp143I	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
BspACI	CCGC	9 cut(s)	43, 108, 160, 312, 333, 713, 967, 1222, 1975
BspANI	GGCC	5 cut(s)	159, 516, 597, 1131, 1415
BspCNI	CTCAG	6 cut(s)	403, 770, 834, 1277, 2200, 2334
BspFNI	CGCG	1 cut(s)	305
BspHI	TCATGA	3 cut(s)	1084, 1752, 2330
BspLI	GGNNCC	6 cut(s)	112, 199, 331, 346, 810, 1858
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	3 cut(s)	92, 900, 1868
BspQI	GCTCTTC	1 cut(s)	2067
BspT107I	GGYRCC	3 cut(s)	197, 329, 1856
BspTI	CTTAAG	1 cut(s)	1280
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	3 cut(s)	1367, 1993, 2139
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	5 cut(s)	346, 894, 1160, 1346, 2259
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
BssNI	GRCGYC	2 cut(s)	243, 290
BssSI	CACGAG	1 cut(s)	1394
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	1394
Bst2UI	CCWGG	3 cut(s)	164, 594, 1014
Bst4CI	ACNGT	3 cut(s)	1080, 2217, 2328
Bst6I	CTCTTC	8 cut(s)	753, 758, 1109, 1929, 1937, 2009, 2034, 2067
BstACI	GRCGYC	2 cut(s)	243, 290
BstAFI	CTTAAG	1 cut(s)	1280
BstC8I	GCNNGC	6 cut(s)	196, 514, 971, 1222, 1740, 1979
BstDEI	CTNAG	9 cut(s)	21, 411, 732, 757, 797, 821, 1264, 2208, 2321
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	4 cut(s)	421, 622, 2056, 2316
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	252, 307
BstKTI	GATC	8 cut(s)	87, 676, 787, 895, 1244, 1876, 1949, 2056
BstMAI	GTCTC	4 cut(s)	129, 575, 614, 1356
BstMBI	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
BstMWI	GCNNNNNNNGC	6 cut(s)	195, 204, 304, 1412, 1850, 1983
BstNI	CCWGG	3 cut(s)	164, 594, 1014
BstNSI	RCATGY	2 cut(s)	910, 1868
BstPAI	GACNNNNGTC	1 cut(s)	1748
BstSCI	CCNGG	3 cut(s)	162, 592, 1012
BstSFI	CTRYAG	2 cut(s)	647, 1783
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	438, 445, 993, 1202, 1282
BstV2I	GAAGAC	4 cut(s)	593, 745, 1025, 1965
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
Bsu36I	CCTNAGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	1392
BsuRI	GGCC	5 cut(s)	159, 516, 597, 1131, 1415
BtsCI	GGATG	4 cut(s)	421, 622, 2056, 2316
BtsIMutI	CAGTG	4 cut(s)	704, 829, 887, 1353
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	6 cut(s)	196, 514, 971, 1222, 1740, 1979
CciI	TCATGA	3 cut(s)	1084, 1752, 2330
CfoI	GCGC	2 cut(s)	252, 307
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	5 cut(s)	28, 234, 658, 808, 1413
CseI	GACGC	3 cut(s)	251, 279, 998
Csp6I	GTAC	4 cut(s)	588, 817, 1195, 1857
CspAI	ACCGGT	1 cut(s)	373
CviQI	GTAC	4 cut(s)	588, 817, 1195, 1857
DdeI	CTNAG	9 cut(s)	21, 411, 732, 757, 797, 821, 1264, 2208, 2321
DpnI	GATC	8 cut(s)	86, 675, 786, 894, 1243, 1875, 1948, 2055
DpnII	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
DraI	TTTAAA	2 cut(s)	697, 1000
EaeI	YGGCCR	2 cut(s)	157, 595
Eam1104I	CTCTTC	8 cut(s)	753, 758, 1109, 1929, 1937, 2009, 2034, 2067
EarI	CTCTTC	8 cut(s)	753, 758, 1109, 1929, 1937, 2009, 2034, 2067
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	1131
Eco31I	GGTCTC	1 cut(s)	575
Eco32I	GATATC	2 cut(s)	280, 1833
Eco47I	GGWCC	4 cut(s)	28, 234, 658, 808
Eco57I	CTGAAG	3 cut(s)	590, 1080, 1254
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	1746
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	2 cut(s)	808, 1413
EcoRII	CCWGG	3 cut(s)	162, 592, 1012
EcoRV	GATATC	2 cut(s)	280, 1833
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 1626, 1658
FauI	CCCGC	3 cut(s)	36, 974, 1229
FauNDI	CATATG	1 cut(s)	2080
FblI	GTMKAC	2 cut(s)	1513, 2292
Fnu4HI	GCNGC	9 cut(s)	109, 160, 313, 333, 427, 459, 1007, 1191, 1296
FokI	GGATG	4 cut(s)	428, 629, 2063, 2303
Fsp4HI	GCNGC	9 cut(s)	109, 160, 313, 333, 427, 459, 1007, 1191, 1296
FspBI	CTAG	8 cut(s)	380, 843, 942, 950, 1373, 1800, 1869, 1970
GlaI	GCGC	2 cut(s)	251, 306
GluI	GCNGC	9 cut(s)	109, 160, 313, 333, 427, 459, 1007, 1191, 1296
GsaI	CCCAGC	1 cut(s)	646
HaeIII	GGCC	5 cut(s)	159, 516, 597, 1131, 1415
HapII	CCGG	2 cut(s)	348, 374
HgaI	GACGC	3 cut(s)	251, 279, 998
HhaI	GCGC	2 cut(s)	252, 307
Hin1I	GRCGYC	2 cut(s)	243, 290
Hin6I	GCGC	2 cut(s)	250, 305
HinP1I	GCGC	2 cut(s)	250, 305
HincII	GTYRAC	2 cut(s)	1153, 2293
HindII	GTYRAC	2 cut(s)	1153, 2293
HpaII	CCGG	2 cut(s)	348, 374
HphI	GGTGA	4 cut(s)	141, 256, 1601, 1664
Hpy166II	GTNNAC	5 cut(s)	840, 1153, 1514, 2293, 2314
Hpy8I	GTNNAC	5 cut(s)	840, 1153, 1514, 2293, 2314
HpyAV	CCTTC	7 cut(s)	19, 799, 1104, 1229, 1706, 1992, 2027
HpyCH4III	ACNGT	3 cut(s)	1080, 2217, 2328
HpyF10VI	GCNNNNNNNGC	6 cut(s)	195, 204, 304, 1412, 1850, 1983
HpyF3I	CTNAG	9 cut(s)	21, 411, 732, 757, 797, 821, 1264, 2208, 2321
Hsp92I	GRCGYC	2 cut(s)	243, 290
HspAI	GCGC	2 cut(s)	250, 305
KpnI	GGTACC	1 cut(s)	1860
Kzo9I	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
LguI	GCTCTTC	1 cut(s)	2067
LmnI	GCTCC	4 cut(s)	116, 350, 556, 915
Lsp1109I	GCAGC	5 cut(s)	438, 445, 993, 1202, 1282
LweI	GCATC	4 cut(s)	438, 1248, 1348, 1511
MaeI	CTAG	8 cut(s)	380, 843, 942, 950, 1373, 1800, 1869, 1970
MalI	GATC	8 cut(s)	86, 675, 786, 894, 1243, 1875, 1948, 2055
MboI	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
MflI	RGATCY	1 cut(s)	784
MlyI	GAGTC	5 cut(s)	161, 349, 1738, 1758, 1815
MmeI	TCCRAC	2 cut(s)	467, 1455
MslI	CAYNNNNRTG	4 cut(s)	269, 615, 1869, 2232
MspCI	CTTAAG	1 cut(s)	1280
MspI	CCGG	2 cut(s)	348, 374
MspR9I	CCNGG	3 cut(s)	164, 594, 1014
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	3 cut(s)	164, 594, 1014
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	6 cut(s)	195, 204, 304, 1412, 1850, 1983
NdeI	CATATG	1 cut(s)	2080
NdeII	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
NlaIV	GGNNCC	6 cut(s)	112, 199, 331, 346, 810, 1858
NmeAIII	GCCGAG	1 cut(s)	278
NspI	RCATGY	2 cut(s)	910, 1868
PaeR7I	CTCGAG	1 cut(s)	1746
PagI	TCATGA	3 cut(s)	1084, 1752, 2330
PceI	AGGCCT	1 cut(s)	1131
PciI	ACATGT	1 cut(s)	906
PciSI	GCTCTTC	1 cut(s)	2067
PcsI	WCGNNNNNNNCGW	1 cut(s)	1826
PctI	GAATGC	1 cut(s)	715
PfoI	TCCNGGA	1 cut(s)	1012
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	9 cut(s)	110, 161, 314, 334, 428, 460, 1008, 1192, 1297
PleI	GAGTC	5 cut(s)	161, 349, 1738, 1757, 1814
PpsI	GAGTC	5 cut(s)	161, 349, 1738, 1757, 1814
PpuMI	RGGWCCY	1 cut(s)	808
PscI	ACATGT	1 cut(s)	906
PshAI	GACNNNNGTC	1 cut(s)	1748
PsiI	TTATAA	1 cut(s)	2156
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	3 cut(s)	162, 592, 1012
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	3 cut(s)	162, 592, 1012
PspN4I	GGNNCC	6 cut(s)	112, 199, 331, 346, 810, 1858
PspPI	GGNCC	5 cut(s)	28, 234, 658, 808, 1413
PspPPI	RGGWCCY	1 cut(s)	808
PspXI	VCTCGAGB	1 cut(s)	1746
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PsuI	RGATCY	1 cut(s)	784
RsaI	GTAC	4 cut(s)	589, 818, 1196, 1858
RsaNI	GTAC	4 cut(s)	588, 817, 1195, 1857
RseI	CAYNNNNRTG	4 cut(s)	269, 615, 1869, 2232
SalI	GTCGAC	1 cut(s)	2291
SapI	GCTCTTC	1 cut(s)	2067
SatI	GCNGC	9 cut(s)	109, 160, 313, 333, 427, 459, 1007, 1191, 1296
Sau3AI	GATC	8 cut(s)	84, 673, 784, 892, 1241, 1873, 1946, 2053
Sau96I	GGNCC	5 cut(s)	28, 234, 658, 808, 1413
SchI	GAGTC	5 cut(s)	161, 349, 1738, 1758, 1815
ScrFI	CCNGG	3 cut(s)	164, 594, 1014
SfaNI	GCATC	4 cut(s)	438, 1248, 1348, 1511
SfcI	CTRYAG	2 cut(s)	647, 1783
Sfr274I	CTCGAG	1 cut(s)	1746
SinI	GGWCC	4 cut(s)	28, 234, 658, 808
SlaI	CTCGAG	1 cut(s)	1746
SmiMI	CAYNNNNRTG	4 cut(s)	269, 615, 1869, 2232
SmlI	CTYRAG	2 cut(s)	1280, 1746
SmoI	CTYRAG	2 cut(s)	1280, 1746
SseBI	AGGCCT	1 cut(s)	1131
SsiI	CCGC	9 cut(s)	43, 108, 160, 312, 333, 713, 967, 1222, 1975
SspI	AATATT	2 cut(s)	1916, 2284
SspMI	CTAG	8 cut(s)	380, 843, 942, 950, 1373, 1800, 1869, 1970
StuI	AGGCCT	1 cut(s)	1131
StyD4I	CCNGG	3 cut(s)	162, 592, 1012
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	1080, 2217, 2328
TaqI	TCGA	5 cut(s)	87, 1109, 1747, 1829, 2292
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	4 cut(s)	111, 162, 315, 335
TscAI	CASTG	4 cut(s)	711, 829, 894, 1353
TseI	GCWGC	5 cut(s)	426, 458, 1006, 1190, 1295
TspGWI	ACGGA	2 cut(s)	1523, 1632
TspRI	CASTG	4 cut(s)	711, 829, 894, 1353
Vha464I	CTTAAG	1 cut(s)	1280
VpaK11BI	GGWCC	4 cut(s)	28, 234, 658, 808
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	6 cut(s)	76, 628, 937, 980, 1461, 1493
XbaI	TCTAGA	2 cut(s)	379, 1969
XceI	RCATGY	2 cut(s)	910, 1868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	1746
XmiI	GTMKAC	2 cut(s)	1513, 2292
XspI	CTAG	8 cut(s)	380, 843, 942, 950, 1373, 1800, 1869, 1970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.