Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002471

Physical Location & Seq

Genomic Coordinates Reverse (-)

22016077 .. 22017547

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGTGGCGATCCAGAAGAAAACAGAGTCGCTCCAGTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATATTCTCGACCACGCCATCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCGCCAGATGACTCGAATTCTCGATTCGATTCAACGTTTGGGTTTGGGTTCGGATCTAGGGTTTTGTGCGGGTGCTGCATCTGAAAGTACTGGGTCCGAAATTGTTTTATTAATGCTAAGAAGGCAAGGAGATGGATTTTCAATCAACACTGCTGGAAGAACTTCAGATGAAGCGAAATTGATCAAGCCCTGTTCTCATCTGATCAAGCCCCCACCCTGTGTTGGTGATCAAGCTAAATCGATCAAGCAAAAGCCGTGTTTGGATGAAGCGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGCTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAGAGGAGGATACAAGTCTTAAACCATCTTCCCAAGCAAGACTTCAAGATTCGATGCCCTGCTGCCACTGCTAAACCCAAACTTGGAAACCATTGGAAACCAGTACTAAAAATCAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

202

Amino Acids

22.65

Weight (kDa)

9.53

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54910
fragaria_vesca	FvH4_4g36230 FvH4_4g36230 FvH4_4g36230 FvH4_5g34980
malus_domestica	MD08G1022200.v1.1 MD13G1010800.v1.1 MD15G1026900.v1.1
prunus_persica	Prupe.1G342200_v2.0.a1
pyrus_communis	pycom08g13590 pycom13g00910 pycom15g02270 pycom15g02280 pycom15g02290
rosa_chinensis	RchiOBHm_Chr1g0336991 RchiOBHm_Chr4g0445981
rosa_laevigata	RLG00000005702 RLG00000029316
rosa_multiflora	Rmu_co8191210.1_g000001 Rmu_sc0000115.1_g000004 Rmu_sc0003001.1_g000004 Rmu_sc0008543.1_g000002 Rmu_sc0009742.1_g000002 Rmu_sc0036469.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315110 Rroxscaffold_5G00386390
rosa_rugosa	Rorug01G0129500 Rorug01G0130100 Rorug04G0366700 Rorug04G0366700
rosa_samantha	Rh1AG150500 Rh1BG118700 Rh1BG118900 Rh1CG141800 Rh1DG157800 Rh4AG428100 Rh4BG437700 Rh4CG454400 Rh4DG436200
rosa_wichuraiana	Rw1G012290 Rw4G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 114, 209, 410
AclI	AACGTT	1 cut(s)	175
AclWI	GGATC	2 cut(s)	7, 201
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	288, 413
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	3 cut(s)	41, 229, 591
AfiI	CCNNNNNNNGG	2 cut(s)	362, 569
AgsI	TTSAA	3 cut(s)	173, 282, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	3 cut(s)	374, 427, 448
AluI	AGCT	3 cut(s)	374, 427, 448
AlwI	GGATC	2 cut(s)	7, 201
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	215, 548
ApoI	RAATTY	1 cut(s)	156
AseI	ATTAAT	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	97, 377
AvaII	GGWCC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	202, 535
BccI	CCATC	3 cut(s)	110, 266, 519
BceAI	ACGGC	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	3 cut(s)	321, 342, 367
BcnI	CCSGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	4 cut(s)	114, 216, 411, 549
BlsI	GCNGC	4 cut(s)	115, 217, 412, 550
BmcAI	AGTACT	3 cut(s)	41, 229, 591
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	227, 530
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	20, 64
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	2 cut(s)	380, 457
BsaBI	GATNNNNATC	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 569
Bse1I	ACTGG	4 cut(s)	37, 47, 235, 587
Bse8I	GATNNNNATC	1 cut(s)	459
BseCI	ATCGAT	2 cut(s)	380, 457
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	362, 569
BseNI	ACTGG	4 cut(s)	37, 47, 235, 587
BseRI	GAGGAG	2 cut(s)	146, 505
BseXI	GCAGC	2 cut(s)	202, 535
BshFI	GGCC	1 cut(s)	434
BshVI	ATCGAT	2 cut(s)	380, 457
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	362, 569
BsnI	GGCC	1 cut(s)	434
Bsp143I	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
BspACI	CCGC	4 cut(s)	5, 114, 209, 410
BspANI	GGCC	1 cut(s)	434
BspDI	ATCGAT	2 cut(s)	380, 457
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	7, 201
BsrI	ACTGG	4 cut(s)	37, 47, 235, 587
BssMI	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	7 cut(s)	15, 196, 324, 345, 370, 384, 457
BstMBI	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 262, 419, 554
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	202, 535
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	2 cut(s)	380, 457
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	434
BsuTUI	ATCGAT	2 cut(s)	380, 457
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	3 cut(s)	60, 288, 552
BtsIMutI	CAGTG	3 cut(s)	60, 288, 552
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	234
ClaI	ATCGAT	2 cut(s)	380, 457
Csp6I	GTAC	3 cut(s)	40, 228, 590
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	7 cut(s)	328, 349, 374, 394, 427, 434, 448
CviKI_1	RGCY	7 cut(s)	328, 349, 374, 394, 427, 434, 448
CviQI	GTAC	3 cut(s)	40, 228, 590
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	7 cut(s)	14, 195, 323, 344, 369, 383, 456
DpnII	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
DraIII	CACNNNGTG	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	288, 413
EcoRI	GAATTC	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	461
FaeI	CATG	1 cut(s)	455
FaiI	YATR	2 cut(s)	453, 607
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	3 cut(s)	321, 342, 367
Fnu4HI	GCNGC	4 cut(s)	114, 216, 411, 549
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	114, 216, 411, 549
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	4 cut(s)	114, 216, 411, 549
GsuI	CTGGAG	2 cut(s)	20, 64
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	2 cut(s)	425, 446
HinfI	GANTC	5 cut(s)	29, 151, 164, 169, 535
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	97, 377
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	7 cut(s)	121, 193, 223, 238, 307, 342, 602
Hpy188III	TCNNGA	6 cut(s)	16, 92, 161, 452, 464, 532
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	65, 218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 262, 419, 554
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	455
Ksp22I	TGATCA	3 cut(s)	321, 342, 367
Kzo9I	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	202, 535
LweI	GCATC	2 cut(s)	227, 530
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	175
MalI	GATC	7 cut(s)	14, 195, 323, 344, 369, 383, 456
MboI	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
MboII	GAAGA	3 cut(s)	31, 309, 506
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	5 cut(s)	156, 240, 317, 414, 468
MlyI	GAGTC	2 cut(s)	38, 145
MnlI	CCTC	7 cut(s)	39, 124, 127, 412, 477, 483, 486
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	2 cut(s)	251, 506
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	215, 262, 419, 554
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 105
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	164, 169, 535
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	115, 217, 412, 550
PleI	GAGTC	2 cut(s)	37, 145
PpsI	GAGTC	2 cut(s)	37, 145
PshBI	ATTAAT	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	41, 229, 591
RsaNI	GTAC	3 cut(s)	40, 228, 590
SaqAI	TTAA	2 cut(s)	251, 506
SatI	GCNGC	4 cut(s)	114, 216, 411, 549
Sau3AI	GATC	7 cut(s)	12, 193, 321, 342, 367, 381, 454
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	3 cut(s)	41, 229, 591
SchI	GAGTC	2 cut(s)	38, 145
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	4 cut(s)	178, 376, 429, 450
SfaNI	GCATC	2 cut(s)	227, 530
SinI	GGWCC	1 cut(s)	234
Sse9I	AATT	5 cut(s)	156, 240, 317, 414, 468
SsiI	CCGC	4 cut(s)	5, 114, 209, 410
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	8 cut(s)	84, 93, 154, 162, 167, 380, 457, 538
TasI	AATT	5 cut(s)	156, 240, 317, 414, 468
TatI	WGTACW	3 cut(s)	39, 227, 589
TauI	GCSGC	2 cut(s)	116, 413
TfiI	GAWTC	3 cut(s)	164, 169, 535
Tru1I	TTAA	2 cut(s)	251, 506
Tru9I	TTAA	2 cut(s)	251, 506
TscAI	CASTG	3 cut(s)	67, 295, 559
TseI	GCWGC	2 cut(s)	215, 548
TspDTI	ATGAA	3 cut(s)	324, 420, 440
TspRI	CASTG	3 cut(s)	67, 295, 559
VpaK11BI	GGWCC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	197
ZrmI	AGTACT	3 cut(s)	41, 229, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.