Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

6777278 .. 6777983

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTTCTCCGATCACGAACCCTATTGCCAAGCAAGTAAGCAACGCATTTGCTAGACAGTACTATCACCTGTGGGAGAACTCCCCCAACCAAGTTTACAGATTTTACAAAGATTGTAGCAAGCTAATTCGTCCTGAAGACAATGGAACCATGAGCACTACAACCACCATAGAAAAAATCAAAGACAAGTTGCTAGCTCTTCGACGGCTCTGTACTTGGAGATCCTTGCATCTGGTAACTGTTGATGAACATTCTTGCATTACTGGTGGAGTTTTCGTTGTCGCAACAGGGTATACAACTGAAAAGGACGGCCAAAAAAAGAAATTTATTCAGAAGTTTTTCTTGGCACCACAAGCTGAAGGAGGCTACTTTCTTGAGAGCGATATGTTATTCAAGCATCAACGCTCCGATTTAGCATCAGTCATTGCTTTACAGTTGATGGTGGACGATGTAGACGACGCTTGGGCCGTGGATGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

6.89

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	13 - 131	3.5e-21	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	293, 453
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	156, 378
AfaI	GTAC	2 cut(s)	62, 214
AgsI	TTSAA	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	3 cut(s)	124, 197, 356
AluI	AGCT	3 cut(s)	124, 197, 356
Alw21I	GWGCWC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	310, 465
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	158
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	3 cut(s)	221, 325, 452
BfaI	CTAG	2 cut(s)	54, 194
BmcAI	AGTACT	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	148, 348
BmsI	GCATC	3 cut(s)	238, 406, 425
BmtI	GCTAGC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	312, 467
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	312, 467
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	12, 221
BspANI	GGCC	2 cut(s)	312, 467
BspLI	GGNNCC	2 cut(s)	148, 348
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	12, 221
BssNAI	GTATAC	1 cut(s)	294
Bst1107I	GTATAC	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	60, 241, 435
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	122, 195
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	15, 224
BstMBI	GATC	2 cut(s)	12, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BstZ17I	GTATAC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	312, 467
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	122, 195
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	61, 213
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	8 cut(s)	5, 124, 197, 208, 312, 356, 366, 467
CviKI_1	RGCY	8 cut(s)	5, 124, 197, 208, 312, 356, 366, 467
CviQI	GTAC	2 cut(s)	61, 213
DpnI	GATC	2 cut(s)	14, 223
DpnII	GATC	2 cut(s)	12, 221
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	156, 378
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	152, 170, 294, 386
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	2 cut(s)	293, 453
FspBI	CTAG	2 cut(s)	54, 194
HaeIII	GGCC	2 cut(s)	312, 467
HgaI	GACGC	1 cut(s)	467
Hin1II	CATG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	97, 294, 445, 454
Hpy188I	TCNGA	3 cut(s)	12, 333, 409
Hpy188III	TCNNGA	3 cut(s)	16, 134, 374
Hpy8I	GTNNAC	4 cut(s)	97, 294, 445, 454
Hpy99I	CGWCG	2 cut(s)	207, 461
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	3 cut(s)	60, 241, 435
HpyCH4V	TGCA	2 cut(s)	229, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	12, 221
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	5 cut(s)	83, 147, 218, 249, 273
LweI	GCATC	3 cut(s)	238, 406, 425
MaeI	CTAG	2 cut(s)	54, 194
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	14, 223
MboI	GATC	2 cut(s)	12, 221
MboII	GAAGA	2 cut(s)	149, 191
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	126, 323
MnlI	CCTC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	2 cut(s)	12, 221
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	2 cut(s)	148, 348
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 465
PdmI	GAANNNNTTC	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	148, 348
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	2 cut(s)	62, 214
RsaNI	GTAC	2 cut(s)	61, 213
SapI	GCTCTTC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	12, 221
Sau96I	GGNCC	1 cut(s)	465
ScaI	AGTACT	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	4 cut(s)	72, 126, 199, 358
SfaNI	GCATC	3 cut(s)	238, 406, 425
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	126, 323
SspMI	CTAG	2 cut(s)	54, 194
TaaI	ACNGT	3 cut(s)	60, 241, 435
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	126, 323
TatI	WGTACW	2 cut(s)	60, 212
TspDTI	ATGAA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	293, 453
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	54, 194
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.