Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

35583156 .. 35606097

Gene Structure 22942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGTTTTCTGGTTTGAGAAGTCAAAAAATGAGACTTGATGACCCAAAACCCTTTTATATATGCACTTTGCAGATGGTCTTGCAAGAGTTAGATAGTTCTAGCCGTGCCCAACTTGTCGGCACCGCCTTTGTGGAGTCTTATTACCATTTTCTTCGCCACGCCCCAGAAGATATGTACAAGTTTTATCAACATTCTAGTGCTTCATATAATGGCAATATGATTACACTGGATGCAATTAAATCCATAAATGATGAATGTCGTACATGTGAAATAGAGAGTGTAGATGCTCAAAAATCTCCTCAGAAAGGGGTGACTGTATTAATAACCGGGTACTTGGTTGGAAAAGACAACGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACAGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGGTATATTAAGGACAATGAATCATCACAAACAAACATCATTGATGAACAAGATTTTGAACAAGGATCAGTTATTCAATCAAGTCAGAGAGAAGATCTTGCAGATACAACCCCGGAAGTCCAGGAGGATGCTTTAAAGAAATCATATGCATCAGTGGTTGCAGAAAGTAGTGTCGCATCCAGTCATGTTCATGCTACCCAAGTGAGGAGGACAATATCTGCAATCACTGGCCACCCATCCCTTGGTTACGCAGATCCTTCTCTTGTACCAGAGGCTTCAGCTCCTGGTCACTTCATATTTGTAAGCAATTTGCCGTACGATGCCACTGTTGGGCAACTTGAGAAGGAATTTAAGAAATTTGGGTCTATTACGTGGGACGGGATCCAAGCTTCAACTATCAGAATCGGGGATTTTCCAGCAGTGATTGAGGAAGAGAGAACCCCCCACCCGAGGTTCTGGTCTATAGAAGTAAAAAGGTTTCCGCAGTCTCTTATCAGTAAAGTTAACAAAGCTGATGGTTGTTTCAGTTGGCAATGGGAGAAGATGGAGGTACCACCTGCTGTAGCTTTGTGGTGCACATTTAAGGCTCGCAATTGTTCCACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

5.57

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	40 - 145	5.3e-21	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	994
Acc36I	ACCTGC	1 cut(s)	994
Acc65I	GGTACC	1 cut(s)	979
AccB1I	GGYRCC	2 cut(s)	122, 979
AccB7I	CCANNNNNTGG	1 cut(s)	671
AciI	CCGC	2 cut(s)	126, 911
AclWI	GGATC	4 cut(s)	502, 677, 805, 818
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	365, 776, 785
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	7 cut(s)	179, 265, 335, 407, 696, 746, 981
AfiI	CCNNNNNNNGG	5 cut(s)	308, 633, 671, 759, 879
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	418, 488, 506, 822
AjnI	CCWGG	2 cut(s)	549, 712
AluBI	AGCT	5 cut(s)	389, 710, 818, 941, 995
AluI	AGCT	5 cut(s)	389, 710, 818, 941, 995
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	2 cut(s)	28, 921
Alw44I	GTGCAC	1 cut(s)	1003
AlwI	GGATC	4 cut(s)	502, 677, 805, 818
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	877
AoxI	GGCC	1 cut(s)	658
ApaLI	GTGCAC	1 cut(s)	1003
ApoI	RAATTY	3 cut(s)	365, 776, 785
AseI	ATTAAT	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	979
AsuC2I	CCSGG	2 cut(s)	331, 542
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	877
BaeGI	GKGCMC	2 cut(s)	112, 1007
BalI	TGGCCA	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	810
BanI	GGYRCC	2 cut(s)	122, 979
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
Bbv12I	GWGCWC	1 cut(s)	1007
BccI	CCATC	4 cut(s)	70, 673, 938, 967
BceAI	ACGGC	2 cut(s)	90, 727
BciT130I	CCWGG	2 cut(s)	551, 714
BcnI	CCSGG	2 cut(s)	331, 542
BcoDI	GTCTC	2 cut(s)	28, 921
BfaI	CTAG	3 cut(s)	102, 198, 386
BfmI	CTRYAG	2 cut(s)	891, 990
BfuAI	ACCTGC	1 cut(s)	994
BglII	AGATCT	1 cut(s)	523
Bme1390I	CCNGG	4 cut(s)	331, 542, 551, 714
BmeT110I	CYCGRG	1 cut(s)	877
BmiI	GGNNCC	3 cut(s)	124, 812, 981
BmrFI	CCNGG	4 cut(s)	331, 542, 551, 714
BmsI	GCATC	6 cut(s)	223, 277, 547, 587, 614, 739
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	2 cut(s)	331, 542
BsaAI	YACGTR	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	540, 670, 878
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 633, 671, 759, 879
Bse1I	ACTGG	3 cut(s)	234, 609, 661
Bse3DI	GCAATG	1 cut(s)	968
BseBI	CCWGG	2 cut(s)	551, 714
BseDI	CCNNGG	3 cut(s)	540, 670, 878
BseGI	GGATG	5 cut(s)	238, 381, 562, 605, 665
BseLI	CCNNNNNNNGG	5 cut(s)	308, 633, 671, 759, 879
BseMI	GCAATG	1 cut(s)	968
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	3 cut(s)	234, 609, 661
BseRI	GAGGAG	2 cut(s)	291, 649
BseSI	GKGCMC	2 cut(s)	112, 1007
BshFI	GGCC	1 cut(s)	660
BshNI	GGYRCC	2 cut(s)	122, 979
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiHKCI	CYCGRG	1 cut(s)	877
BsiSI	CCGG	2 cut(s)	330, 542
BsiWI	CGTACG	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	5 cut(s)	308, 633, 671, 759, 879
BsmAI	GTCTC	2 cut(s)	28, 921
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	660
BsoBI	CYCGRG	1 cut(s)	877
Bsp1286I	GDGCHC	2 cut(s)	112, 1007
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	494, 523, 682, 810
BspACI	CCGC	2 cut(s)	126, 911
BspANI	GGCC	1 cut(s)	660
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	124, 812, 981
BspMI	ACCTGC	1 cut(s)	994
BspPI	GGATC	4 cut(s)	502, 677, 805, 818
BspT107I	GGYRCC	2 cut(s)	122, 979
BsrDI	GCAATG	1 cut(s)	968
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	234, 609, 661
BssECI	CCNNGG	3 cut(s)	540, 670, 878
BssMI	GATC	4 cut(s)	494, 523, 682, 810
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	2 cut(s)	551, 714
Bst4CI	ACNGT	2 cut(s)	319, 757
Bst6I	CTCTTC	1 cut(s)	855
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	5 cut(s)	238, 381, 562, 605, 665
BstKTI	GATC	4 cut(s)	497, 526, 685, 813
BstMAI	GTCTC	2 cut(s)	28, 921
BstMBI	GATC	4 cut(s)	494, 523, 682, 810
BstNI	CCWGG	2 cut(s)	551, 714
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	4 cut(s)	329, 540, 549, 712
BstSFI	CTRYAG	2 cut(s)	891, 990
BstSLI	GKGCMC	2 cut(s)	112, 1007
BstX2I	RGATCY	3 cut(s)	523, 682, 810
BstYI	RGATCY	3 cut(s)	523, 682, 810
BsuRI	GGCC	1 cut(s)	660
BtsCI	GGATG	5 cut(s)	238, 381, 562, 605, 665
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	5 cut(s)	227, 588, 654, 753, 855
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	1 cut(s)	1018
CaiI	CAGNNNCTG	1 cut(s)	713
Csp6I	GTAC	7 cut(s)	178, 264, 334, 406, 695, 745, 980
CviAII	CATG	4 cut(s)	267, 614, 620, 1032
CviJI	RGCY	9 cut(s)	105, 389, 660, 704, 710, 818, 941, 995, 1016
CviKI_1	RGCY	9 cut(s)	105, 389, 660, 704, 710, 818, 941, 995, 1016
CviQI	GTAC	7 cut(s)	178, 264, 334, 406, 695, 745, 980
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	496, 525, 684, 812
DpnII	GATC	4 cut(s)	494, 523, 682, 810
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	549, 712
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	4 cut(s)	270, 617, 623, 1035
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	4 cut(s)	266, 613, 619, 1031
FauNDI	CATATG	1 cut(s)	574
FokI	GGATG	5 cut(s)	245, 368, 569, 592, 652
FspBI	CTAG	3 cut(s)	102, 198, 386
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	2 cut(s)	330, 542
Hin1II	CATG	4 cut(s)	270, 617, 623, 1035
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	3 cut(s)	137, 449, 831
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	2 cut(s)	330, 542
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	934, 1005
Hpy188I	TCNGA	3 cut(s)	306, 516, 830
Hpy8I	GTNNAC	2 cut(s)	934, 1005
HpyAV	CCTTC	3 cut(s)	354, 696, 766
HpyCH4III	ACNGT	2 cut(s)	319, 757
HpyCH4IV	ACGT	2 cut(s)	354, 800
HpyCH4V	TGCA	9 cut(s)	66, 73, 85, 236, 530, 578, 590, 650, 1005
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	354, 800
Hsp92II	CATG	4 cut(s)	270, 617, 623, 1035
KpnI	GGTACC	1 cut(s)	983
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	494, 523, 682, 810
LmnI	GCTCC	2 cut(s)	394, 715
LweI	GCATC	6 cut(s)	223, 277, 547, 587, 614, 739
MaeI	CTAG	3 cut(s)	102, 198, 386
MaeII	ACGT	2 cut(s)	354, 800
MaeIII	GTNAC	3 cut(s)	313, 674, 716
MalI	GATC	4 cut(s)	496, 525, 684, 812
MboI	GATC	4 cut(s)	494, 523, 682, 810
MboII	GAAGA	6 cut(s)	146, 182, 406, 533, 872, 982
MfeI	CAATTG	1 cut(s)	1021
MflI	RGATCY	3 cut(s)	523, 682, 810
MhlI	GDGCHC	2 cut(s)	112, 1007
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	6 cut(s)	237, 365, 736, 776, 785, 1021
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	8 cut(s)	312, 547, 627, 630, 694, 850, 873, 970
Mox20I	TGGCCA	1 cut(s)	660
Mph1103I	ATGCAT	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	7 cut(s)	240, 323, 438, 563, 780, 933, 1011
MslI	CAYNNNNRTG	2 cut(s)	198, 618
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	2 cut(s)	330, 542
MspR9I	CCNGG	4 cut(s)	331, 542, 551, 714
MunI	CAATTG	1 cut(s)	1021
MvaI	CCWGG	2 cut(s)	551, 714
NciI	CCSGG	2 cut(s)	331, 542
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	4 cut(s)	494, 523, 682, 810
NlaIII	CATG	4 cut(s)	270, 617, 623, 1035
NlaIV	GGNNCC	3 cut(s)	124, 812, 981
NmuCI	GTSAC	2 cut(s)	313, 716
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	994
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	449, 831
Pfl23II	CGTACG	1 cut(s)	744
PflMI	CCANNNNNTGG	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	549
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	801
PscI	ACATGT	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	549, 712
PspGI	CCWGG	2 cut(s)	549, 712
PspLI	CGTACG	1 cut(s)	744
PspN4I	GGNNCC	3 cut(s)	124, 812, 981
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	3 cut(s)	523, 682, 810
RsaI	GTAC	7 cut(s)	179, 265, 335, 407, 696, 746, 981
RsaNI	GTAC	7 cut(s)	178, 264, 334, 406, 695, 745, 980
RseI	CAYNNNNRTG	2 cut(s)	198, 618
SaqAI	TTAA	7 cut(s)	240, 323, 438, 563, 780, 933, 1011
Sau3AI	GATC	4 cut(s)	494, 523, 682, 810
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	331, 542, 551, 714
SduI	GDGCHC	2 cut(s)	112, 1007
SfaNI	GCATC	6 cut(s)	223, 277, 547, 587, 614, 739
SfcI	CTRYAG	2 cut(s)	891, 990
SmiMI	CAYNNNNRTG	2 cut(s)	198, 618
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	237, 365, 736, 776, 785, 1021
SsiI	CCGC	2 cut(s)	126, 911
SspMI	CTAG	3 cut(s)	102, 198, 386
StyD4I	CCNGG	4 cut(s)	329, 540, 549, 712
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	2 cut(s)	319, 757
TaiI	ACGT	2 cut(s)	357, 803
TasI	AATT	6 cut(s)	237, 365, 736, 776, 785, 1021
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	449, 831
Tru1I	TTAA	7 cut(s)	240, 323, 438, 563, 780, 933, 1011
Tru9I	TTAA	7 cut(s)	240, 323, 438, 563, 780, 933, 1011
TscAI	CASTG	5 cut(s)	234, 588, 661, 760, 855
TseFI	GTSAC	2 cut(s)	313, 716
Tsp45I	GTSAC	2 cut(s)	313, 716
TspDTI	ATGAA	8 cut(s)	195, 270, 370, 400, 462, 489, 608, 712
TspRI	CASTG	5 cut(s)	234, 588, 661, 760, 855
Van91I	CCANNNNNTGG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	1003
VspI	ATTAAT	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	3 cut(s)	365, 776, 785
XceI	RCATGY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XspI	CTAG	3 cut(s)	102, 198, 386
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.